Analysis of interatomic Contacts of Structural Units in PDB entry:
1ZJA


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1ZJA entry

There are 2 chains in PDB entry 1ZJA (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 1LYS 557
B
 LYS 1LYS 557
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 59 helices in PDB entry 1ZJA. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
5 10Right-handed alpha
Helix 2
2
A
16 20Right-handed 310
Helix 3
3
A
30 37Right-handed alpha
Helix 4
4
A
37 45Right-handed alpha
Helix 5
5
A
78 92Right-handed alpha
Helix 6
6
A
109 116Right-handed alpha
Helix 7
7
A
123 127Right-handed 310
Helix 8
8
A
175 191Right-handed alpha
Helix 9
9
A
201 205Right-handed 310
Helix 10
10
A
215 221Right-handed alpha
Helix 11
11
A
221 226Right-handed alpha
Helix 12
12
A
231 243Right-handed alpha
Helix 13
13
A
244 247Right-handed 310
Helix 14
14
A
259 261Right-handed 310
Helix 15
15
A
262 268Right-handed alpha
Helix 16
16
A
269 272Right-handed 310
Helix 17
17
A
298 314Right-handed alpha
Helix 18
18
A
330 336Right-handed alpha
Helix 19
19
A
342 356Right-handed alpha
Helix 20
20
A
366 370Right-handed 310
Helix 21
21
A
378 382Right-handed 310
Helix 22
22
A
384 395Right-handed alpha
Helix 23
23
A
401 413Right-handed alpha
Helix 24
24
A
414 418Right-handed 310
Helix 25
25
A
426 431Right-handed 310
Helix 26
26
A
441 446Right-handed 310
Helix 27
27
A
448 454Right-handed alpha
Helix 28
28
A
458 473Right-handed alpha
Helix 29
29
A
474 479Right-handed alpha
Helix 30
30
B
5 10Right-handed alpha
Helix 31
31
B
16 20Right-handed 310
Helix 32
32
B
30 37Right-handed alpha
Helix 33
33
B
37 45Right-handed alpha
Helix 34
34
B
74 77Right-handed 310
Helix 35
35
B
78 92Right-handed alpha
Helix 36
36
B
109 117Right-handed alpha
Helix 37
37
B
123 127Right-handed 310
Helix 38
38
B
175 191Right-handed alpha
Helix 39
39
B
201 205Right-handed 310
Helix 40
40
B
215 221Right-handed alpha
Helix 41
41
B
221 226Right-handed alpha
Helix 42
42
B
231 243Right-handed alpha
Helix 43
43
B
244 247Right-handed 310
Helix 44
44
B
259 261Right-handed 310
Helix 45
45
B
262 268Right-handed alpha
Helix 46
46
B
269 272Right-handed 310
Helix 47
47
B
298 314Right-handed alpha
Helix 48
48
B
330 336Right-handed alpha
Helix 49
49
B
342 355Right-handed alpha
Helix 50
50
B
366 370Right-handed 310
Helix 51
51
B
378 382Right-handed 310
Helix 52
52
B
384 395Right-handed alpha
Helix 53
53
B
401 413Right-handed alpha
Helix 54
54
B
414 418Right-handed 310
Helix 55
55
B
426 431Right-handed 310
Helix 56
56
B
441 446Right-handed 310
Helix 57
57
B
448 454Right-handed alpha
Helix 58
58
B
458 472Right-handed alpha
Helix 59
59
B
474 479Right-handed alpha
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There are 10 sheets in PDB entry 1ZJA. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
276 278first strand
Strand 2
A
250 254parallel
Strand 3
A
196 199parallel
Strand 4
A
95 100parallel
Strand 5
A
48 51parallel
Strand 6
A
12 15parallel
Strand 7
A
360 364parallel
Strand 8
A
320 321parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
55 56first strand
Strand 2
A
68 72anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
129 130first strand
Strand 2
A
159 161anti-parallel
Strand 3
A
150 152anti-parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
480 483first strand
Strand 2
A
491 498anti-parallel
Strand 3
A
501 508anti-parallel
Strand 4
A
551 556anti-parallel
Strand 5
A
524 531anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
514 517first strand
Strand 2
A
543 546anti-parallel
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There are 8 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
276 278first strand
Strand 2
B
250 254parallel
Strand 3
B
196 199parallel
Strand 4
B
95 100parallel
Strand 5
B
48 51parallel
Strand 6
B
12 15parallel
Strand 7
B
360 364parallel
Strand 8
B
320 321parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
55 56first strand
Strand 2
B
68 72anti-parallel
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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
129 130first strand
Strand 2
B
159 161anti-parallel
Strand 3
B
150 152anti-parallel
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There are 5 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
480 483first strand
Strand 2
B
491 498anti-parallel
Strand 3
B
501 508anti-parallel
Strand 4
B
551 556anti-parallel
Strand 5
B
524 531anti-parallel
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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
514 517first strand
Strand 2
B
543 546anti-parallel
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