Analysis of interatomic Contacts of Structural Units in PDB entry:
2AB8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2AB8 entry

There is 1 chain in PDB entry 2AB8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
THR 10PHE 360
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 17 helices in PDB entry 2AB8. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
30 37Right-handed alpha
Helix 2
2
A
48 52Right-handed 310
Helix 3
3
A
53 59Right-handed alpha
Helix 4
4
A
60 62Right-handed 310
Helix 5
5
A
69 83Right-handed alpha
Helix 6
6
A
97 110Right-handed alpha
Helix 7
7
A
142 148Right-handed 310
Helix 8
8
A
153 158Right-handed alpha
Helix 9
9
A
169 173Right-handed 310
Helix 10
10
A
175 186Right-handed alpha
Helix 11
11
A
199 206Right-handed alpha
Helix 12
12
A
206 216Right-handed alpha
Helix 13
13
A
224 234Right-handed alpha
Helix 14
14
A
248 265Right-handed alpha
Helix 15
15
A
306 310Right-handed 310
Helix 16
16
A
315 330Right-handed alpha
Helix 17
17
A
333 349Right-handed alpha
Back to top of page

There are 2 sheets in PDB entry 2AB8. Click on sheet of interest to get list of strands forming it: A, B,

There are 9 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
113 119first strand
Strand 2
A
88 95parallel
Strand 3
A
15 18parallel
Strand 4
A
163 167parallel
Strand 5
A
192 196parallel
Strand 6
A
219 223parallel
Strand 7
A
273 279parallel
Strand 8
A
282 289anti-parallel
Strand 9
A
295 300anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
44 46first strand
Strand 2
A
135 141parallel
Strand 3
A
125 132anti-parallel
Strand 4
A
22 28parallel
Strand 5
A
64 68anti-parallel
Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il