Analysis of interatomic Contacts of Structural Units in PDB entry:
2AG1


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2AG1 entry

There are 3 chains in PDB entry 2AG1 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
MSE 3ILE 555
B
MSE 3ILE 555
C
MSE 3ARG 253
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are122 helices in PDB entry 2AG1. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
6 18Right-handed alpha
Helix 2
2
A
27 29Right-handed 310
Helix 3
3
A
30 41Right-handed alpha
Helix 4
4
A
49 65Right-handed alpha
Helix 5
5
A
75 81Right-handed alpha
Helix 6
6
A
81 92Right-handed alpha
Helix 7
7
A
117 123Right-handed alpha
Helix 8
8
A
124 126Right-handed 310
Helix 9
9
A
134 136Right-handed 310
Helix 10
10
A
137 151Right-handed alpha
Helix 11
11
A
163 168Right-handed alpha
Helix 12
12
A
190 204Right-handed alpha
Helix 13
13
A
212 219Right-handed alpha
Helix 14
14
A
220 232Right-handed alpha
Helix 15
15
A
239 246Right-handed 310
Helix 16
16
A
249 251Right-handed 310
Helix 17
17
A
258 267Right-handed 310
Helix 18
18
A
281 285Right-handed 310
Helix 19
19
A
304 308Right-handed 310
Helix 20
20
A
321 335Right-handed alpha
Helix 21
21
A
342 362Right-handed alpha
Helix 22
22
A
371 381Right-handed alpha
Helix 23
23
A
394 405Right-handed alpha
Helix 24
24
A
423 438Right-handed alpha
Helix 25
25
A
448 452Right-handed alpha
Helix 26
26
A
453 455Right-handed 310
Helix 27
27
A
456 464Right-handed alpha
Helix 28
28
A
478 489Right-handed alpha
Helix 29
29
A
503 511Right-handed alpha
Helix 30
30
A
520 534Right-handed alpha
Helix 31
31
B
6 18Right-handed alpha
Helix 32
32
B
27 29Right-handed 310
Helix 33
33
B
30 41Right-handed alpha
Helix 34
34
B
49 65Right-handed alpha
Helix 35
35
B
75 81Right-handed alpha
Helix 36
36
B
81 92Right-handed alpha
Helix 37
37
B
117 123Right-handed alpha
Helix 38
38
B
124 126Right-handed 310
Helix 39
39
B
134 136Right-handed 310
Helix 40
40
B
137 151Right-handed alpha
Helix 41
41
B
163 168Right-handed alpha
Helix 42
42
B
190 203Right-handed alpha
Helix 43
43
B
212 219Right-handed alpha
Helix 44
44
B
220 232Right-handed alpha
Helix 45
45
B
238 246Right-handed 310
Helix 46
46
B
249 251Right-handed 310
Helix 47
47
B
258 264Right-handed 310
Helix 48
48
B
281 285Right-handed 310
Helix 49
49
B
304 308Right-handed 310
Helix 50
50
B
321 335Right-handed alpha
Helix 51
51
B
342 362Right-handed alpha
Helix 52
52
B
371 381Right-handed alpha
Helix 53
53
B
394 401Right-handed alpha
Helix 54
54
B
402 404Right-handed 310
Helix 55
55
B
423 439Right-handed alpha
Helix 56
56
B
448 452Right-handed alpha
Helix 57
57
B
453 455Right-handed 310
Helix 58
58
B
456 465Right-handed alpha
Helix 59
59
B
478 489Right-handed alpha
Helix 60
60
B
503 511Right-handed alpha
Helix 61
61
B
520 534Right-handed alpha
Helix 62
62
C
6 18Right-handed alpha
Helix 63
63
C
27 29Right-handed 310
Helix 64
64
C
30 41Right-handed alpha
Helix 65
65
C
49 65Right-handed alpha
Helix 66
66
C
75 80Right-handed alpha
Helix 67
67
C
81 92Right-handed alpha
Helix 68
68
C
117 123Right-handed alpha
Helix 69
69
C
124 126Right-handed 310
Helix 70
70
C
134 136Right-handed 310
Helix 71
71
C
137 151Right-handed alpha
Helix 72
72
C
163 168Right-handed alpha
Helix 73
73
C
190 203Right-handed alpha
Helix 74
74
C
212 219Right-handed alpha
Helix 75
75
C
220 232Right-handed alpha
Helix 76
76
C
238 246Right-handed 310
Helix 77
77
C
249 251Right-handed 310
Helix 78
78
C
258 267Right-handed 310
Helix 79
79
C
281 285Right-handed 310
Helix 80
80
C
304 308Right-handed 310
Helix 81
81
C
321 335Right-handed alpha
Helix 82
82
C
342 362Right-handed alpha
Helix 83
83
C
371 381Right-handed alpha
Helix 84
84
C
394 405Right-handed alpha
Helix 85
85
C
423 438Right-handed alpha
Helix 86
86
C
449 455Right-handed 310
Helix 87
87
C
456 464Right-handed alpha
Helix 88
88
C
478 489Right-handed alpha
Helix 89
89
C
503 511Right-handed alpha
Helix 90
90
C
520 533Right-handed alpha
Helix 91
91
D
6 17Right-handed alpha
Helix 92
92
D
27 29Right-handed 310
Helix 93
93
D
30 41Right-handed alpha
Helix 94
94
D
49 65Right-handed alpha
Helix 95
95
D
75 80Right-handed alpha
Helix 96
96
D
81 92Right-handed alpha
Helix 97
97
D
117 123Right-handed alpha
Helix 98
98
D
124 126Right-handed 310
Helix 99
99
D
134 136Right-handed 310
Helix 100
100
D
137 151Right-handed alpha
Helix 101
101
D
163 168Right-handed alpha
Helix 102
102
D
190 203Right-handed alpha
Helix 103
103
D
212 219Right-handed alpha
Helix 104
104
D
220 232Right-handed alpha
Helix 105
105
D
238 246Right-handed 310
Helix 106
106
D
249 251Right-handed 310
Helix 107
107
D
258 261Right-handed 310
Helix 108
108
D
263 267Right-handed 310
Helix 109
109
D
281 285Right-handed 310
Helix 110
110
D
321 335Right-handed alpha
Helix 111
111
D
342 362Right-handed alpha
Helix 112
112
D
371 381Right-handed alpha
Helix 113
113
D
394 401Right-handed alpha
Helix 114
114
D
402 404Right-handed 310
Helix 115
115
D
423 439Right-handed alpha
Helix 116
116
D
448 452Right-handed alpha
Helix 117
117
D
453 455Right-handed 310
Helix 118
118
D
456 465Right-handed alpha
Helix 119
119
D
478 489Right-handed alpha
Helix 120
120
D
503 511Right-handed alpha
Helix 121
121
D
520 534Right-handed alpha
Helix 122
122
D
550 555Right-handed 310
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There are 16 sheets in PDB entry 2AG1. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
4 5first strand
Strand 2
A
169 170anti-parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
44 46first strand
Strand 2
A
22 24parallel
Strand 3
A
68 72parallel
Strand 4
A
95 101parallel
Strand 5
A
157 162parallel
Strand 6
A
128 131parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
253 256first strand
Strand 2
A
235 237parallel
Strand 3
A
207 211parallel
Strand 4
A
272 276parallel
Strand 5
A
297 301parallel
Strand 6
A
316 318parallel
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There are 6 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
411 413first strand
Strand 2
A
387 391parallel
Strand 3
A
441 447parallel
Strand 4
A
469 474parallel
Strand 5
A
538 543parallel
Strand 6
A
514 518parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
4 5first strand
Strand 2
B
169 170anti-parallel
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There are 6 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
44 46first strand
Strand 2
B
22 24parallel
Strand 3
B
68 72parallel
Strand 4
B
95 101parallel
Strand 5
B
157 162parallel
Strand 6
B
128 131parallel
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There are 6 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
253 256first strand
Strand 2
B
235 237parallel
Strand 3
B
207 211parallel
Strand 4
B
272 276parallel
Strand 5
B
297 301parallel
Strand 6
B
316 318parallel
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There are 6 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
411 413first strand
Strand 2
B
387 391parallel
Strand 3
B
441 447parallel
Strand 4
B
469 474parallel
Strand 5
B
538 543parallel
Strand 6
B
514 518parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
4 5first strand
Strand 2
C
169 170anti-parallel
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There are 6 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
44 46first strand
Strand 2
C
22 24parallel
Strand 3
C
68 72parallel
Strand 4
C
95 101parallel
Strand 5
C
157 162parallel
Strand 6
C
128 131parallel
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There are 6 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
253 256first strand
Strand 2
C
235 237parallel
Strand 3
C
207 211parallel
Strand 4
C
272 276parallel
Strand 5
C
297 302parallel
Strand 6
C
316 319parallel
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There are 6 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
411 413first strand
Strand 2
C
387 391parallel
Strand 3
C
441 447parallel
Strand 4
C
469 474parallel
Strand 5
C
538 543parallel
Strand 6
C
514 518parallel
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There are 2 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
4 5first strand
Strand 2
D
169 170anti-parallel
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There are 6 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
44 46first strand
Strand 2
D
22 24parallel
Strand 3
D
68 72parallel
Strand 4
D
95 101parallel
Strand 5
D
157 162parallel
Strand 6
D
128 131parallel
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There are 6 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
253 256first strand
Strand 2
D
235 237parallel
Strand 3
D
207 211parallel
Strand 4
D
272 276parallel
Strand 5
D
297 301parallel
Strand 6
D
316 318parallel
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There are 6 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
411 413first strand
Strand 2
D
387 391parallel
Strand 3
D
441 447parallel
Strand 4
D
469 474parallel
Strand 5
D
538 543parallel
Strand 6
D
514 518parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il