Analysis of interatomic Contacts of Structural Units in PDB entry:
2AGV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2AGV entry

There are 2 chains in PDB entry 2AGV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLY 994
B
 MET 1GLY 994
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 96 helices in PDB entry 2AGV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
3 7Right-handed 310
Helix 2
2
A
8 17Right-handed alpha
Helix 3
3
A
25 37Right-handed alpha
Helix 4
4
A
48 56Right-handed alpha
Helix 5
5
A
59 78Right-handed alpha
Helix 6
6
A
83 87Right-handed 310
Helix 7
7
A
88 111Right-handed alpha
Helix 8
8
A
114 120Right-handed alpha
Helix 9
9
A
121 123Right-handed 310
Helix 10
10
A
143 145Right-handed 310
Helix 11
11
A
200 204Right-handed 310
Helix 12
12
A
226 229Right-handed 310
Helix 13
13
A
230 241Right-handed alpha
Helix 14
14
A
247 274Right-handed alpha
Helix 15
15
A
275 281Right-handed 310
Helix 16
16
A
287 307Right-handed alpha
Helix 17
17
A
310 328Right-handed alpha
Helix 18
18
A
337 344Right-handed alpha
Helix 19
19
A
403 406Right-handed 310
Helix 20
20
A
407 420Right-handed alpha
Helix 21
21
A
439 453Right-handed alpha
Helix 22
22
A
463 468Right-handed alpha
Helix 23
23
A
469 476Right-handed alpha
Helix 24
24
A
517 524Right-handed alpha
Helix 25
25
A
538 555Right-handed alpha
Helix 26
26
A
572 576Right-handed 310
Helix 27
27
A
580 582Right-handed 310
Helix 28
28
A
583 588Right-handed alpha
Helix 29
29
A
606 617Right-handed alpha
Helix 30
30
A
628 639Right-handed alpha
Helix 31
31
A
655 660Right-handed alpha
Helix 32
32
A
662 673Right-handed alpha
Helix 33
33
A
682 693Right-handed alpha
Helix 34
34
A
703 714Right-handed alpha
Helix 35
35
A
724 730Right-handed alpha
Helix 36
36
A
739 781Right-handed alpha
Helix 37
37
A
788 798Right-handed alpha
Helix 38
38
A
800 807Right-handed alpha
Helix 39
39
A
808 810Right-handed 310
Helix 40
40
A
815 819Right-handed 310
Helix 41
41
A
831 858Right-handed alpha
Helix 42
42
A
888 892Right-handed 310
Helix 43
43
A
893 914Right-handed alpha
Helix 44
44
A
926 929Right-handed 310
Helix 45
45
A
930 950Right-handed alpha
Helix 46
46
A
951 958Right-handed alpha
Helix 47
47
A
963 975Right-handed alpha
Helix 48
48
A
975 991Right-handed alpha
Helix 49
49
B
3 7Right-handed 310
Helix 50
50
B
8 17Right-handed alpha
Helix 51
51
B
25 37Right-handed alpha
Helix 52
52
B
48 56Right-handed alpha
Helix 53
53
B
59 78Right-handed alpha
Helix 54
54
B
83 87Right-handed 310
Helix 55
55
B
88 111Right-handed alpha
Helix 56
56
B
114 120Right-handed alpha
Helix 57
57
B
121 123Right-handed 310
Helix 58
58
B
143 145Right-handed 310
Helix 59
59
B
200 204Right-handed 310
Helix 60
60
B
226 229Right-handed 310
Helix 61
61
B
230 241Right-handed alpha
Helix 62
62
B
247 274Right-handed alpha
Helix 63
63
B
275 281Right-handed 310
Helix 64
64
B
287 307Right-handed alpha
Helix 65
65
B
310 328Right-handed alpha
Helix 66
66
B
337 344Right-handed alpha
Helix 67
67
B
403 406Right-handed 310
Helix 68
68
B
407 420Right-handed alpha
Helix 69
69
B
439 453Right-handed alpha
Helix 70
70
B
463 468Right-handed alpha
Helix 71
71
B
469 476Right-handed alpha
Helix 72
72
B
517 524Right-handed alpha
Helix 73
73
B
538 555Right-handed alpha
Helix 74
74
B
572 576Right-handed 310
Helix 75
75
B
580 582Right-handed 310
Helix 76
76
B
583 588Right-handed alpha
Helix 77
77
B
606 617Right-handed alpha
Helix 78
78
B
628 639Right-handed alpha
Helix 79
79
B
655 660Right-handed alpha
Helix 80
80
B
662 673Right-handed alpha
Helix 81
81
B
682 693Right-handed alpha
Helix 82
82
B
703 714Right-handed alpha
Helix 83
83
B
724 730Right-handed alpha
Helix 84
84
B
739 781Right-handed alpha
Helix 85
85
B
788 798Right-handed alpha
Helix 86
86
B
800 807Right-handed alpha
Helix 87
87
B
808 810Right-handed 310
Helix 88
88
B
815 819Right-handed 310
Helix 89
89
B
831 858Right-handed alpha
Helix 90
90
B
888 892Right-handed 310
Helix 91
91
B
893 914Right-handed alpha
Helix 92
92
B
926 929Right-handed 310
Helix 93
93
B
930 950Right-handed alpha
Helix 94
94
B
951 958Right-handed alpha
Helix 95
95
B
963 975Right-handed alpha
Helix 96
96
B
975 991Right-handed alpha
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There are 12 sheets in PDB entry 2AGV. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
138 141first strand
Strand 2
A
126 130anti-parallel
Strand 3
A
150 154anti-parallel
Strand 4
A
218 225anti-parallel
Strand 5
A
162 168anti-parallel
Strand 6
A
207 208anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
187 188first strand
Strand 2
A
174 176anti-parallel
Strand 3
A
213 216anti-parallel
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There are 8 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
331 333first strand
Strand 2
A
733 735anti-parallel
Strand 3
A
716 720parallel
Strand 4
A
698 702parallel
Strand 5
A
347 351parallel
Strand 6
A
620 625parallel
Strand 7
A
675 677parallel
Strand 8
A
652 654parallel
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There are 9 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
400 401first strand
Strand 2
A
395 397anti-parallel
Strand 3
A
376 384anti-parallel
Strand 4
A
362 373anti-parallel
Strand 5
A
591 600anti-parallel
Strand 6
A
560 567anti-parallel
Strand 7
A
511 516anti-parallel
Strand 8
A
493 500anti-parallel
Strand 9
A
479 485anti-parallel
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There are 7 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
400 401first strand
Strand 2
A
395 397anti-parallel
Strand 3
A
376 384anti-parallel
Strand 4
A
362 373anti-parallel
Strand 5
A
591 600anti-parallel
Strand 6
A
525 530parallel
Strand 7
A
533 536anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
424 428first strand
Strand 2
A
433 437anti-parallel
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There are 6 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
138 141first strand
Strand 2
B
126 130anti-parallel
Strand 3
B
150 154anti-parallel
Strand 4
B
218 225anti-parallel
Strand 5
B
162 168anti-parallel
Strand 6
B
207 208anti-parallel
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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
187 188first strand
Strand 2
B
174 176anti-parallel
Strand 3
B
213 216anti-parallel
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There are 8 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
331 333first strand
Strand 2
B
733 735anti-parallel
Strand 3
B
716 720parallel
Strand 4
B
698 702parallel
Strand 5
B
347 351parallel
Strand 6
B
620 625parallel
Strand 7
B
675 677parallel
Strand 8
B
652 654parallel
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There are 9 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
400 401first strand
Strand 2
B
395 397anti-parallel
Strand 3
B
376 384anti-parallel
Strand 4
B
362 373anti-parallel
Strand 5
B
591 600anti-parallel
Strand 6
B
560 567anti-parallel
Strand 7
B
511 516anti-parallel
Strand 8
B
493 500anti-parallel
Strand 9
B
479 485anti-parallel
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There are 7 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
400 401first strand
Strand 2
B
395 397anti-parallel
Strand 3
B
376 384anti-parallel
Strand 4
B
362 373anti-parallel
Strand 5
B
591 600anti-parallel
Strand 6
B
525 530parallel
Strand 7
B
533 536anti-parallel
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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
424 428first strand
Strand 2
B
433 437anti-parallel
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