Analysis of interatomic Contacts of Structural Units in PDB entry:
2AJI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2AJI entry

There are 2 chains in PDB entry 2AJI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 228VAL 413
B
 GLU 228LYS 412
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 2AJI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
249 256Right-handed 310
Helix 2
2
A
265 273Right-handed alpha
Helix 3
3
A
275 288Right-handed alpha
Helix 4
4
A
291 295Right-handed 310
Helix 5
5
A
342 352Right-handed alpha
Helix 6
6
A
384 388Right-handed 310
Helix 7
7
A
391 406Right-handed alpha
Helix 8
8
B
249 256Right-handed 310
Helix 9
9
B
265 273Right-handed alpha
Helix 10
10
B
275 285Right-handed alpha
Helix 11
11
B
342 353Right-handed alpha
Helix 12
12
B
384 388Right-handed 310
Helix 13
13
B
391 406Right-handed alpha
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There are 5 sheets in PDB entry 2AJI. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
242 247first strand
Strand 2
A
229 236anti-parallel
Strand 3
A
302 310anti-parallel
Strand 4
A
317 323anti-parallel
Strand 5
A
258 262parallel
Strand 6
A
334 337anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
242 247first strand
Strand 2
A
229 236anti-parallel
Strand 3
A
409 412anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
243 247first strand
Strand 2
B
229 234anti-parallel
Strand 3
B
409 412anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
302 310first strand
Strand 2
B
317 323anti-parallel
Strand 3
B
258 262parallel
Strand 4
B
334 337anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
360 361first strand
Strand 2
B
380 381anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il