Analysis of interatomic Contacts of Structural Units in PDB entry:
2AJR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2AJR entry

There are 2 chains in PDB entry 2AJR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 0LYS 319
B
 HIS 0LYS 319
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 2AJR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
30 32Right-handed 310
Helix 2
2
A
40 52Right-handed alpha
Helix 3
3
A
64 78Right-handed alpha
Helix 4
4
A
117 133Right-handed alpha
Helix 5
5
A
151 163Right-handed alpha
Helix 6
6
A
172 182Right-handed alpha
Helix 7
7
A
207 222Right-handed alpha
Helix 8
8
A
252 256Right-handed 310
Helix 9
9
A
258 275Right-handed alpha
Helix 10
10
A
277 293Right-handed alpha
Helix 11
11
A
302 308Right-handed alpha
Helix 12
12
A
309 311Right-handed 310
Helix 13
13
B
40 52Right-handed alpha
Helix 14
14
B
64 78Right-handed alpha
Helix 15
15
B
117 133Right-handed alpha
Helix 16
16
B
151 163Right-handed alpha
Helix 17
17
B
172 180Right-handed alpha
Helix 18
18
B
207 222Right-handed alpha
Helix 19
19
B
252 256Right-handed 310
Helix 20
20
B
258 275Right-handed alpha
Helix 21
21
B
277 293Right-handed alpha
Helix 22
22
B
302 309Right-handed alpha
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There are 5 sheets in PDB entry 2AJR. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 10 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
81 88first strand
Strand 2
A
56 63parallel
Strand 3
A
2 6parallel
Strand 4
A
137 141parallel
Strand 5
A
166 170parallel
Strand 6
A
188 189parallel
Strand 7
A
224 229parallel
Strand 8
A
233 237anti-parallel
Strand 9
A
242 247anti-parallel
Strand 10
A
313 317anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
34 39first strand
Strand 2
A
10 16anti-parallel
Strand 3
A
93 100parallel
Strand 4
A
105 110anti-parallel
Strand 5
B
25 27parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
25 27first strand
Strand 2
B
105 110parallel
Strand 3
B
93 100anti-parallel
Strand 4
B
10 16parallel
Strand 5
B
37 39anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
81 83first strand
Strand 2
B
56 63parallel
Strand 3
B
86 88parallel
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There are 10 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
81 83first strand
Strand 2
B
56 63parallel
Strand 3
B
2 6parallel
Strand 4
B
137 141parallel
Strand 5
B
166 170parallel
Strand 6
B
188 189parallel
Strand 7
B
224 229parallel
Strand 8
B
233 238anti-parallel
Strand 9
B
242 247anti-parallel
Strand 10
B
313 317anti-parallel
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