Analysis of interatomic Contacts of Structural Units in PDB entry:
2APU


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2APU entry

There are 56 chains in PDB entry 2APU (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 1VAL 136
B
 LYS 1VAL 136
C
 LYS 1VAL 136
D
 LYS 1VAL 136
E
 LYS 1VAL 136
F
 LYS 1VAL 136
G
 LYS 1VAL 136
H
 LYS 1VAL 136
I
 LYS 1VAL 136
J
 LYS 1VAL 136
K
 LYS 1VAL 136
L
 LYS 1VAL 136
M
 LYS 1VAL 136
N
 LYS 1VAL 136
O
 LYS 1VAL 136
P
 LYS 1VAL 136
Q
 LYS 1VAL 136
R
 LYS 1VAL 136
S
 LYS 1VAL 136
T
 LYS 1VAL 136
U
 LYS 1VAL 136
V
 LYS 1VAL 136
W
 LYS 1VAL 136
X
 LYS 1VAL 136
Y
 LYS 1VAL 136
Z
 LYS 1VAL 136
a
 LYS 1VAL 136
b
 LYS 1VAL 136
c
 LYS 1VAL 136
d
 LYS 1VAL 136
e
 LYS 1VAL 136
f
 LYS 1VAL 136
g
 LYS 1VAL 136
h
 LYS 1VAL 136
i
 LYS 1VAL 136
j
 LYS 1VAL 136
k
 LYS 1VAL 136
l
 LYS 1VAL 136
m
 LYS 1VAL 136
n
 LYS 1VAL 136
o
 LYS 1VAL 136
p
 LYS 1VAL 136
q
 LYS 1VAL 136
r
 LYS 1VAL 136
s
 LYS 1VAL 136
t
 LYS 1VAL 136
u
 LYS 1VAL 136
v
 LYS 1VAL 136
w
 LYS 1VAL 136
x
 LYS 1VAL 136
y
 LYS 1VAL 136
z
 LYS 1VAL 136
0
 LYS 1VAL 136
1
 LYS 1VAL 136
2
 LYS 1VAL 136
3
 LYS 1VAL 136
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are210 helices in PDB entry 2APU. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
1 13Right-handed alpha
Helix 2
2
A
24 33Right-handed alpha
Helix 3
3
A
50 55Right-handed alpha
Helix 4
4
B
1 13Right-handed alpha
Helix 5
5
B
24 33Right-handed alpha
Helix 6
6
B
50 56Right-handed alpha
Helix 7
7
B
57 60Right-handed 310
Helix 8
8
C
1 13Right-handed alpha
Helix 9
9
C
24 33Right-handed alpha
Helix 10
10
C
50 57Right-handed alpha
Helix 11
11
C
58 60Right-handed 310
Helix 12
12
D
2 13Right-handed alpha
Helix 13
13
D
24 33Right-handed alpha
Helix 14
14
D
50 57Right-handed alpha
Helix 15
15
D
58 60Right-handed 310
Helix 16
16
E
1 13Right-handed alpha
Helix 17
17
E
24 33Right-handed alpha
Helix 18
18
E
50 55Right-handed alpha
Helix 19
19
F
1 13Right-handed alpha
Helix 20
20
F
24 33Right-handed alpha
Helix 21
21
F
50 56Right-handed alpha
Helix 22
22
F
57 60Right-handed 310
Helix 23
23
G
1 13Right-handed alpha
Helix 24
24
G
24 33Right-handed alpha
Helix 25
25
G
50 57Right-handed alpha
Helix 26
26
G
58 60Right-handed 310
Helix 27
27
H
2 13Right-handed alpha
Helix 28
28
H
24 33Right-handed alpha
Helix 29
29
H
50 57Right-handed alpha
Helix 30
30
H
58 60Right-handed 310
Helix 31
31
I
1 13Right-handed alpha
Helix 32
32
I
24 33Right-handed alpha
Helix 33
33
I
50 55Right-handed alpha
Helix 34
34
J
1 13Right-handed alpha
Helix 35
35
J
24 33Right-handed alpha
Helix 36
36
J
50 56Right-handed alpha
Helix 37
37
J
57 60Right-handed 310
Helix 38
38
K
1 13Right-handed alpha
Helix 39
39
K
24 33Right-handed alpha
Helix 40
40
K
50 57Right-handed alpha
Helix 41
41
K
58 60Right-handed 310
Helix 42
42
L
2 13Right-handed alpha
Helix 43
43
L
24 33Right-handed alpha
Helix 44
44
L
50 57Right-handed alpha
Helix 45
45
L
58 60Right-handed 310
Helix 46
46
M
1 13Right-handed alpha
Helix 47
47
M
24 33Right-handed alpha
Helix 48
48
M
50 55Right-handed alpha
Helix 49
49
N
1 13Right-handed alpha
Helix 50
50
N
24 33Right-handed alpha
Helix 51
51
N
50 56Right-handed alpha
Helix 52
52
N
57 60Right-handed 310
Helix 53
53
O
1 13Right-handed alpha
Helix 54
54
O
24 33Right-handed alpha
Helix 55
55
O
50 57Right-handed alpha
Helix 56
56
O
58 60Right-handed 310
Helix 57
57
P
2 13Right-handed alpha
Helix 58
58
P
24 33Right-handed alpha
Helix 59
59
P
50 57Right-handed alpha
Helix 60
60
P
58 60Right-handed 310
Helix 61
61
Q
1 13Right-handed alpha
Helix 62
62
Q
24 33Right-handed alpha
Helix 63
63
Q
50 55Right-handed alpha
Helix 64
64
R
1 13Right-handed alpha
Helix 65
65
R
24 33Right-handed alpha
Helix 66
66
R
50 56Right-handed alpha
Helix 67
67
R
57 60Right-handed 310
Helix 68
68
S
1 13Right-handed alpha
Helix 69
69
S
24 33Right-handed alpha
Helix 70
70
S
50 57Right-handed alpha
Helix 71
71
S
58 60Right-handed 310
Helix 72
72
T
2 13Right-handed alpha
Helix 73
73
T
24 33Right-handed alpha
Helix 74
74
T
50 57Right-handed alpha
Helix 75
75
T
58 60Right-handed 310
Helix 76
76
U
1 13Right-handed alpha
Helix 77
77
U
24 33Right-handed alpha
Helix 78
78
U
50 55Right-handed alpha
Helix 79
79
V
1 13Right-handed alpha
Helix 80
80
V
24 33Right-handed alpha
Helix 81
81
V
50 56Right-handed alpha
Helix 82
82
V
57 60Right-handed 310
Helix 83
83
W
1 13Right-handed alpha
Helix 84
84
W
24 33Right-handed alpha
Helix 85
85
W
50 57Right-handed alpha
Helix 86
86
W
58 60Right-handed 310
Helix 87
87
X
2 13Right-handed alpha
Helix 88
88
X
24 33Right-handed alpha
Helix 89
89
X
50 57Right-handed alpha
Helix 90
90
X
58 60Right-handed 310
Helix 91
91
Y
1 13Right-handed alpha
Helix 92
92
Y
24 33Right-handed alpha
Helix 93
93
Y
50 55Right-handed alpha
Helix 94
94
Z
1 13Right-handed alpha
Helix 95
95
Z
24 33Right-handed alpha
Helix 96
96
Z
50 56Right-handed alpha
Helix 97
97
Z
57 60Right-handed 310
Helix 98
98
a
1 13Right-handed alpha
Helix 99
99
a
24 33Right-handed alpha
Helix 100
100
a
50 57Right-handed alpha
Helix 101
101
a
58 60Right-handed 310
Helix 102
102
b
2 13Right-handed alpha
Helix 103
103
b
24 33Right-handed alpha
Helix 104
104
b
50 57Right-handed alpha
Helix 105
105
b
58 60Right-handed 310
Helix 106
106
c
1 13Right-handed alpha
Helix 107
107
c
24 33Right-handed alpha
Helix 108
108
c
50 55Right-handed alpha
Helix 109
109
d
1 13Right-handed alpha
Helix 110
110
d
24 33Right-handed alpha
Helix 111
111
d
50 56Right-handed alpha
Helix 112
112
d
57 60Right-handed 310
Helix 113
113
e
1 13Right-handed alpha
Helix 114
114
e
24 33Right-handed alpha
Helix 115
115
e
50 57Right-handed alpha
Helix 116
116
e
58 60Right-handed 310
Helix 117
117
f
2 13Right-handed alpha
Helix 118
118
f
24 33Right-handed alpha
Helix 119
119
f
50 57Right-handed alpha
Helix 120
120
f
58 60Right-handed 310
Helix 121
121
g
1 13Right-handed alpha
Helix 122
122
g
24 33Right-handed alpha
Helix 123
123
g
50 55Right-handed alpha
Helix 124
124
h
1 13Right-handed alpha
Helix 125
125
h
24 33Right-handed alpha
Helix 126
126
h
50 56Right-handed alpha
Helix 127
127
h
57 60Right-handed 310
Helix 128
128
i
1 13Right-handed alpha
Helix 129
129
i
24 33Right-handed alpha
Helix 130
130
i
50 57Right-handed alpha
Helix 131
131
i
58 60Right-handed 310
Helix 132
132
j
2 13Right-handed alpha
Helix 133
133
j
24 33Right-handed alpha
Helix 134
134
j
50 57Right-handed alpha
Helix 135
135
j
58 60Right-handed 310
Helix 136
136
k
1 13Right-handed alpha
Helix 137
137
k
24 33Right-handed alpha
Helix 138
138
k
50 55Right-handed alpha
Helix 139
139
l
1 13Right-handed alpha
Helix 140
140
l
24 33Right-handed alpha
Helix 141
141
l
50 56Right-handed alpha
Helix 142
142
l
57 60Right-handed 310
Helix 143
143
m
1 13Right-handed alpha
Helix 144
144
m
24 33Right-handed alpha
Helix 145
145
m
50 57Right-handed alpha
Helix 146
146
m
58 60Right-handed 310
Helix 147
147
n
2 13Right-handed alpha
Helix 148
148
n
24 33Right-handed alpha
Helix 149
149
n
50 57Right-handed alpha
Helix 150
150
n
58 60Right-handed 310
Helix 151
151
o
1 13Right-handed alpha
Helix 152
152
o
24 33Right-handed alpha
Helix 153
153
o
50 55Right-handed alpha
Helix 154
154
p
1 13Right-handed alpha
Helix 155
155
p
24 33Right-handed alpha
Helix 156
156
p
50 56Right-handed alpha
Helix 157
157
p
57 60Right-handed 310
Helix 158
158
q
1 13Right-handed alpha
Helix 159
159
q
24 33Right-handed alpha
Helix 160
160
q
50 57Right-handed alpha
Helix 161
161
q
58 60Right-handed 310
Helix 162
162
r
2 13Right-handed alpha
Helix 163
163
r
24 33Right-handed alpha
Helix 164
164
r
50 57Right-handed alpha
Helix 165
165
r
58 60Right-handed 310
Helix 166
166
s
1 13Right-handed alpha
Helix 167
167
s
24 33Right-handed alpha
Helix 168
168
s
50 55Right-handed alpha
Helix 169
169
t
1 13Right-handed alpha
Helix 170
170
t
24 33Right-handed alpha
Helix 171
171
t
50 56Right-handed alpha
Helix 172
172
t
57 60Right-handed 310
Helix 173
173
u
1 13Right-handed alpha
Helix 174
174
u
24 33Right-handed alpha
Helix 175
175
u
50 57Right-handed alpha
Helix 176
176
u
58 60Right-handed 310
Helix 177
177
v
2 13Right-handed alpha
Helix 178
178
v
24 33Right-handed alpha
Helix 179
179
v
50 57Right-handed alpha
Helix 180
180
v
58 60Right-handed 310
Helix 181
181
w
1 13Right-handed alpha
Helix 182
182
w
24 33Right-handed alpha
Helix 183
183
w
50 55Right-handed alpha
Helix 184
184
x
1 13Right-handed alpha