Analysis of interatomic Contacts of Structural Units in PDB entry:
2AS5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2AS5 entry

There are 8 chains in PDB entry 2AS5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
T 4001 G 4021
B
A 5001 T 5021
C
T 4001 G 4021
D
A 5001 T 5021
N
ALA 392VAL 678
M
ALA 392VAL 678
F
ILE 502ARG 584
G
ILE 502ARG 584
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 16 helices in PDB entry 2AS5. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
N
504 508Right-handed 310
Helix 2
2
N
522 528Right-handed alpha
Helix 3
3
N
571 576Right-handed alpha
Helix 4
4
M
504 508Right-handed 310
Helix 5
5
M
522 528Right-handed alpha
Helix 6
6
M
571 575Right-handed 310
Helix 7
7
F
508 518Right-handed alpha
Helix 8
8
F
526 538Right-handed alpha
Helix 9
9
F
539 542Right-handed 310
Helix 10
10
F
544 559Right-handed alpha
Helix 11
11
F
576 581Right-handed alpha
Helix 12
12
G
508 518Right-handed alpha
Helix 13
13
G
526 538Right-handed alpha
Helix 14
14
G
539 542Right-handed 310
Helix 15
15
G
544 559Right-handed alpha
Helix 16
16
G
576 581Right-handed alpha
Back to top of page

There are 14 sheets in PDB entry 2AS5. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
N
404 405first strand
Strand 2
N
408 409anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
N
423 424first strand
Strand 2
N
516 520parallel
Strand 3
N
474 478anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
N
443 444first strand
Strand 2
N
510 511anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
N
489 490first strand
Strand 2
N
499 503anti-parallel
Strand 3
N
454 462anti-parallel
Strand 4
N
541 552anti-parallel
Strand 5
N
556 568anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
N
579 583first strand
Strand 2
N
595 601anti-parallel
Strand 3
N
637 641anti-parallel
Strand 4
N
627 628anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
N
587 589first strand
Strand 2
N
671 676parallel
Strand 3
N
656 661anti-parallel
Strand 4
N
608 614anti-parallel
Strand 5
N
620 624anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
M
404 405first strand
Strand 2
M
408 409anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
M
423 424first strand
Strand 2
M
516 520parallel
Strand 3
M
474 478anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
M
443 444first strand
Strand 2
M
510 511anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
M
489 493first strand
Strand 2
M
496 503anti-parallel
Strand 3
M
454 462anti-parallel
Strand 4
M
541 552anti-parallel
Strand 5
M
556 568anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
M
579 583first strand
Strand 2
M
595 601anti-parallel
Strand 3
M
637 641anti-parallel
Strand 4
M
627 628anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
M
587 589first strand
Strand 2
M
671 676parallel
Strand 3
M
654 661anti-parallel
Strand 4
M
608 614anti-parallel
Strand 5
M
620 624anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
562 567first strand
Strand 2
F
570 575anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
562 567first strand
Strand 2
G
570 575anti-parallel
Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il