Analysis of interatomic Contacts of Structural Units in PDB entry:
2AUH


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2AUH entry

There are 4 chains in PDB entry 2AUH (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 TYR 984ILE 1157
A
 GLU 1159ASP 1161
A
 ARG 1164LYS 1283
B
 GLU 373LYS 409
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 15 helices in PDB entry 2AUH. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
992 994Right-handed 310
Helix 2
2
A
1037 1053Right-handed alpha
Helix 3
3
A
1083 1090Right-handed alpha
Helix 4
4
A
1105 1126Right-handed alpha
Helix 5
5
A
1134 1136Right-handed 310
Helix 6
6
A
1172 1176Right-handed 310
Helix 7
7
A
1177 1184Right-handed alpha
Helix 8
8
A
1187 1203Right-handed alpha
Helix 9
9
A
1214 1224Right-handed alpha
Helix 10
10
A
1235 1246Right-handed alpha
Helix 11
11
A
1249 1253Right-handed 310
Helix 12
12
A
1255 1264Right-handed alpha
Helix 13
13
A
1265 1267Right-handed 310
Helix 14
14
A
1270 1275Right-handed alpha
Helix 15
15
B
391 408Right-handed alpha
Back to top of page

There are 5 sheets in PDB entry 2AUH. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
996 1001first strand
Strand 2
A
1008 1016anti-parallel
Strand 3
A
1024 1032anti-parallel
Strand 4
A
1072 1077anti-parallel
Strand 5
A
1062 1066anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1128 1129first strand
Strand 2
A
1155 1156anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1138 1140first strand
Strand 2
A
1146 1148anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1163 1164first strand
Strand 2
A
1185 1186anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1168 1171first strand
Strand 2
B
377 380anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il