Analysis of interatomic Contacts of Structural Units in PDB entry:
2B8K


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2B8K entry

There are 12 chains in PDB entry 2B8K (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
VAL 2PRO 1455
B
ASP 20PHE 1224
C
GLU 3ASP 268
D
SER 4TYR 221
E
ASP 2MET 215
F
LYS 72LEU 155
G
MET 1ILE 171
H
SER 2ARG 146
I
THR 2GLN 120
J
MET 1PRO 65
K
MET 1ALA 115
L
ALA 25ARG 70
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are140 helices in PDB entry 2B8K. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
23 31Right-handed alpha
Helix 2
2
A
95 104Right-handed alpha
Helix 3
3
A
119 124Right-handed alpha
Helix 4
4
A
134 143Right-handed alpha
Helix 5
5
A
203 214Right-handed alpha
Helix 6
6
A
215 222Right-handed alpha
Helix 7
7
A
230 234Right-handed 310
Helix 8
8
A
243 247Right-handed 310
Helix 9
9
A
261 281Right-handed alpha
Helix 10
10
A
285 289Right-handed 310
Helix 11
11
A
292 303Right-handed alpha
Helix 12
12
A
324 330Right-handed alpha
Helix 13
13
A
334 340Right-handed alpha
Helix 14
14
A
368 372Right-handed alpha
Helix 15
15
A
384 395Right-handed alpha
Helix 16
16
A
451 453Right-handed 310
Helix 17
17
A
474 479Right-handed alpha
Helix 18
18
A
494 505Right-handed alpha
Helix 19
19
A
506 511Right-handed alpha
Helix 20
20
A
514 517Right-handed 310
Helix 21
21
A
524 534Right-handed alpha
Helix 22
22
A
543 553Right-handed alpha
Helix 23
23
A
574 582Right-handed alpha
Helix 24
24
A
618 623Right-handed alpha
Helix 25
25
A
628 638Right-handed alpha
Helix 26
26
A
638 661Right-handed alpha
Helix 27
27
A
665 670Right-handed 310
Helix 28
28
A
672 696Right-handed alpha
Helix 29
29
A
709 737Right-handed alpha
Helix 30
30
A
741 750Right-handed alpha
Helix 31
31
A
754 763Right-handed alpha
Helix 32
32
A
793 798Right-handed alpha
Helix 33
33
A
809 828Right-handed alpha
Helix 34
34
A
831 846Right-handed alpha
Helix 35
35
A
867 871Right-handed 310
Helix 36
36
A
889 898Right-handed alpha
Helix 37
37
A
924 947Right-handed alpha
Helix 38
38
A
959 971Right-handed alpha
Helix 39
39
A
982 995Right-handed alpha
Helix 40
40
A
1004 1026Right-handed alpha
Helix 41
41
A
1027 1034Right-handed alpha
Helix 42
42
A
1038 1057Right-handed alpha
Helix 43
43
A
1063 1074Right-handed alpha
Helix 44
44
A
1097 1107Right-handed alpha
Helix 45
45
A
1127 1139Right-handed alpha
Helix 46
46
A
1142 1146Right-handed alpha
Helix 47
47
A
1166 1172Right-handed alpha
Helix 48
48
A
1198 1205Right-handed alpha
Helix 49
49
A
1208 1221Right-handed alpha
Helix 50
50
A
1255 1270Right-handed alpha
Helix 51
51
A
1312 1317Right-handed alpha
Helix 52
52
A
1331 1338Right-handed alpha
Helix 53
53
A
1340 1358Right-handed alpha
Helix 54
54
A
1365 1375Right-handed alpha
Helix 55
55
A
1395 1401Right-handed alpha
Helix 56
56
A
1404 1414Right-handed alpha
Helix 57
57
A
1423 1431Right-handed alpha
Helix 58
58
A
1436 1440Right-handed 310
Helix 59
59
B
26 41Right-handed alpha
Helix 60
60
B
44 56Right-handed alpha
Helix 61
61
B
57 64Right-handed alpha
Helix 62
62
B
113 120Right-handed alpha
Helix 63
63
B
179 184Right-handed alpha
Helix 64
64
B
185 191Right-handed alpha
Helix 65
65
B
282 288Right-handed alpha
Helix 66
66
B
295 302Right-handed alpha
Helix 67
67
B
307 322Right-handed alpha
Helix 68
68
B
326 333Right-handed alpha
Helix 69
69
B
346 356Right-handed alpha
Helix 70
70
B
370 390Right-handed alpha
Helix 71
71
B
400 402Right-handed 310
Helix 72
72
B
408 426Right-handed alpha
Helix 73
73
B
428 433Right-handed alpha
Helix 74
74
B
450 464Right-handed alpha
Helix 75
75
B
487 496Right-handed alpha
Helix 76
76
B
551 559Right-handed alpha
Helix 77
77
B
565 569Right-handed 310
Helix 78
78
B
570 574Right-handed 310
Helix 79
79
B
592 605Right-handed alpha
Helix 80
80
B
619 622Right-handed 310
Helix 81
81
B
654 660Right-handed alpha
Helix 82
82
B
661 666Right-handed alpha
Helix 83
83
B
680 687Right-handed alpha
Helix 84
84
B
695 699Right-handed alpha
Helix 85
85
B
744 748Right-handed 310
Helix 86
86
B
752 756Right-handed 310
Helix 87
87
B
763 774Right-handed alpha
Helix 88
88
B
784 788Right-handed 310
Helix 89
89
B
806 812Right-handed 310
Helix 90
90
B
843 848Right-handed alpha
Helix 91
91
B
889 893Right-handed 310
Helix 92
92
B
1013 1017Right-handed 310
Helix 93
93
B
1022 1035Right-handed alpha
Helix 94
94
B
1052 1061Right-handed alpha
Helix 95
95
B
1098 1102Right-handed 310
Helix 96
96
B
1131 1142Right-handed alpha
Helix 97
97
B
1143 1152Right-handed alpha
Helix 98
98
B
1197 1210Right-handed alpha
Helix 99
99
C
26 40Right-handed alpha
Helix 100
100
C
59 70Right-handed alpha
Helix 101
101
C
76 80Right-handed 310
Helix 102
102
C
82 86Right-handed 310
Helix 103
103
C
116 118Right-handed 310
Helix 104
104
C
196 201Right-handed alpha
Helix 105
105
C
204 208Right-handed 310
Helix 106
106
C
241 258Right-handed alpha
Helix 107
107
C
258 264Right-handed alpha
Helix 108
108
D
30 34Right-handed 310
Helix 109
109
D
54 70Right-handed alpha
Helix 110
110
D
120 134Right-handed alpha
Helix 111
111
D
138 151Right-handed alpha
Helix 112
112
D
158 168Right-handed alpha
Helix 113
113
D
175 183Right-handed alpha
Helix 114
114
D
187 195Right-handed alpha
Helix 115
115
D
203 218Right-handed alpha
Helix 116
116
E
5 26Right-handed alpha
Helix 117
117
E
39 47Right-handed alpha
Helix 118
118
E
54 58Right-handed 310
Helix 119
119
E
67 72Right-handed alpha
Helix 120
120
E
91 104Right-handed alpha
Helix 121
121
E
123 127Right-handed 310
Helix 122
122
E
138 140Right-handed 310
Helix 123
123
E
143 147Right-handed 310
Helix 124
124
E
157 169Right-handed alpha
Helix 125
125
E
171 175Right-handed 310
Helix 126
126
E
182 189Right-handed alpha
Helix 127
127
F
86 102Right-handed alpha
Helix 128
128
F
116 125Right-handed alpha
Helix 129
129
G
14 18Right-handed 310
Helix 130
130
G
21 33Right-handed alpha
Helix 131
131
G
113 115Right-handed 310
Helix 132
132
H
83 87Right-handed 310
Helix 133
133
H
129 133Right-handed 310
Helix 134
134
J
16 27Right-handed alpha
Helix 135
135
J
31 39Right-handed alpha
Helix 136
136
J
43 53Right-handed alpha
Helix 137
137
J
56 62Right-handed alpha
Helix 138
138
K
5 10Right-handed 310
Helix 139
139
K
39 50Right-handed alpha
Helix 140
140
K
82 111Right-handed alpha
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There are 50 sheets in PDB entry 2B8K. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, AA, AB, AC, AD, AE, AF, AG, AH, AI, AJ, AK, AL, AM, AN, AO, AP, AQ, AR, AS, AT, AU, AV, AW, AX,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
1418 1419first strand
Strand 2
A
16 21anti-parallel
Strand 3
B
1212 1217anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
82 90first strand
Strand 2
A
236 241anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
151 152first strand
Strand 2
A
162 163anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
173 177first strand
Strand 2
A
180 184anti-parallel
Strand 3
A
200 202anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
343 345first strand
Strand 2
B
1128 1130anti-parallel
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There are 8 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
1104 1106first strand
Strand 2
A
348 355anti-parallel
Strand 3
A
486 490anti-parallel
Strand 4
A
441 445anti-parallel
Strand 5
A
455 463anti-parallel
Strand 6
A
363 367parallel
Strand 7
A
468 470anti-parallel
Strand 8
A
348 355parallel
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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
375 379first strand
Strand 2
A
431 435anti-parallel
Strand 3
A
402 407anti-parallel
Strand 4
A
411 413anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
512 513first strand
Strand 2
A
518 519anti-parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
540 542first strand
Strand 2
A
571 573anti-parallel
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There are 3 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
587 589first strand
Strand 2
A
606 608anti-parallel
Strand 3
A
611 614anti-parallel
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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
766 767first strand
Strand 2
A
799 800anti-parallel
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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
769 770first strand
Strand 2
A
773 774anti-parallel
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There are 3 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
849 851first strand
Strand 2
A
855 857anti-parallel
Strand 3
A
863 865anti-parallel
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There are 2 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
879 882first strand
Strand 2
A
953 956anti-parallel
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There are 3 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
1117 1119first strand
Strand 2
A
1303 1307anti-parallel
Strand 3
A
1283 1287anti-parallel
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There are 5 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
1225 1228first strand
Strand 2
A
1237 1241anti-parallel
Strand 3
A
1194 1197anti-parallel
Strand 4
A
1147 1153anti-parallel
Strand 5
I
42 45anti-parallel
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There are 2 strands in Q sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
1290 1292first strand
Strand 2
A
1298 1300anti-parallel
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There are 6 strands in R sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
143 147first strand
Strand 2
F
132 137anti-parallel
Strand 3
A
1442 1445anti-parallel
Strand 4
G
59 61anti-parallel
Strand 5
G
68 73anti-parallel
Strand 6
G
8 13anti-parallel
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There are 3 strands in S sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
91 97first strand
Strand 2
B
127 133anti-parallel
Strand 3
B
165 169anti-parallel
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There are 2 strands in T sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
101 103first strand
Strand 2
B
109 111anti-parallel
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There are 2 strands in U sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
210 211first strand
Strand 2
B
481 482anti-parallel
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There are 4 strands in V sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
404 407first strand
Strand 2
B
214 218anti-parallel
Strand 3
B
497 499parallel
Strand 4
B
537 538anti-parallel
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There are 2 strands in W sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
224 227first strand
Strand 2
B
236 239anti-parallel
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There are 2 strands in X sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
241 242first strand
Strand 2
B
252 253anti-parallel
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There are 3 strands in Y sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
255 256first strand
Strand 2
B
270 272anti-parallel
Strand 3
B
280 281anti-parallel
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There are 3 strands in Z sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
544 545first strand
Strand 2
B
633 639anti-parallel
Strand 3
B
690 694anti-parallel
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There are 4 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
544 545first strand
Strand 2
B
633 639anti-parallel
Strand 3
B
740 741anti-parallel
Strand 4
B
703 704parallel
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There are 4 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
585 586first strand
Strand 2
B
580 582anti-parallel
Strand 3
B
624 627parallel
Strand 4
B
614 617anti-parallel
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There are 4 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
793 796first strand
Strand 2
B
853 861anti-parallel
Strand 3
B
961 972anti-parallel
Strand 4
B
948 951anti-parallel
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There are 4 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
793 796first strand
Strand 2
B
853 861anti-parallel
Strand 3
B
961 972anti-parallel
Strand 4
B
954 957anti-parallel
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There are 2 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
821 827first strand
Strand 2
B
1086 1092anti-parallel
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There are 3 strands in AF sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
838 842first strand
Strand 2
B
988 994parallel
Strand 3
B
979 980anti-parallel
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There are 2 strands in AG sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
910 912first strand
Strand 2
B
939 940anti-parallel
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There are 2 strands in AH sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
915 916first strand
Strand 2
B
935 936anti-parallel
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There are 2 strands in AI sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
1159 1163first strand
Strand 2
B
1191 1195anti-parallel
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There are 2 strands in AJ sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
7 8first strand
Strand 2
C
22 23anti-parallel
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There are 5 strands in AK sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
119 120first strand
Strand 2
C
97 100anti-parallel
Strand 3
C
157 160anti-parallel
Strand 4
C
45 49anti-parallel
Strand 5
L
67 68anti-parallel
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There are 2 strands in AL sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
53 54first strand
Strand 2
C
153 154anti-parallel
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There are 2 strands in AM sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
111 114first strand
Strand 2
C
143 147anti-parallel
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There are 2 strands in AN sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
176 177first strand
Strand 2
C
231 232anti-parallel
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There are 2 strands in AO sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
36 38first strand
Strand 2
D
44 46anti-parallel
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There are 5 strands in AP sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
49 50first strand
Strand 2
G
2 5anti-parallel
Strand 3
G
76 79anti-parallel
Strand 4
G
43 48anti-parallel
Strand 5
G
38 39anti-parallel
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There are 4 strands in AQ sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
60 62first strand
Strand 2
E
78 81anti-parallel
Strand 3
E
107 112parallel
Strand 4
E
131 136parallel
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There are 3 strands in AR sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
177 178first strand
Strand 2
E
207 214parallel
Strand 3
E
196 201anti-parallel
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There are 7 strands in AS sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
169 170first strand
Strand 2
G
142 153anti-parallel
Strand 3
G
156 162anti-parallel
Strand 4
G
107 111parallel
Strand 5
G
98 102anti-parallel
Strand 6
G
85 95anti-parallel
Strand 7
G
142 153anti-parallel
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There are 2 strands in AT sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
129 131first strand
Strand 2
G
136 138anti-parallel
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There are 9 strands in AU sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
95 98first strand
Strand 2
H
141 145anti-parallel
Strand 3
H
54 58anti-parallel
Strand 4
H
7 16anti-parallel
Strand 5
H
24 30anti-parallel
Strand 6
H
37 42anti-parallel
Strand 7
H
121 127anti-parallel
Strand 8
H
112 118anti-parallel
Strand 9
H
100 105anti-parallel
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There are 3 strands in AV sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
I
17 19first strand
Strand 2
I
24 28anti-parallel
Strand 3
I
35 37anti-parallel
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There are 2 strands in AW sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
I
70 71first strand
Strand 2
I
83 84anti-parallel
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There are 4 strands in AX sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
K
21 23first strand
Strand 2
K
30 36anti-parallel
Strand 3
K
70 77anti-parallel
Strand 4
K
56 62anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il