Analysis of interatomic Contacts of Structural Units in PDB entry:
2B8W


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2B8W entry

There are 2 chains in PDB entry 2B8W (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 6ASP 308
B
 HIS 6LEU 309
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 2B8W. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
24 34Right-handed alpha
Helix 2
2
A
50 59Right-handed alpha
Helix 3
3
A
108 123Right-handed alpha
Helix 4
4
A
135 155Right-handed alpha
Helix 5
5
A
197 206Right-handed alpha
Helix 6
6
A
213 230Right-handed alpha
Helix 7
7
A
249 253Right-handed 310
Helix 8
8
A
254 258Right-handed 310
Helix 9
9
A
259 277Right-handed alpha
Helix 10
10
A
289 305Right-handed alpha
Helix 11
11
B
24 32Right-handed alpha
Helix 12
12
B
50 60Right-handed alpha
Helix 13
13
B
108 123Right-handed alpha
Helix 14
14
B
135 156Right-handed alpha
Helix 15
15
B
197 206Right-handed alpha
Helix 16
16
B
213 230Right-handed alpha
Helix 17
17
B
249 253Right-handed 310
Helix 18
18
B
254 258Right-handed 310
Helix 19
19
B
259 277Right-handed alpha
Helix 20
20
B
289 307Right-handed alpha
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There are 4 sheets in PDB entry 2B8W. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
20 23first strand
Strand 2
A
11 17anti-parallel
Strand 3
A
78 84anti-parallel
Strand 4
A
92 98anti-parallel
Strand 5
A
38 45parallel
Strand 6
A
125 131parallel
Strand 7
A
177 183parallel
Strand 8
A
233 237parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
190 191first strand
Strand 2
A
194 195anti-parallel
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There are 8 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
20 23first strand
Strand 2
B
11 17anti-parallel
Strand 3
B
78 84anti-parallel
Strand 4
B
92 98anti-parallel
Strand 5
B
38 45parallel
Strand 6
B
125 131parallel
Strand 7
B
177 183parallel
Strand 8
B
233 237parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
190 191first strand
Strand 2
B
194 195anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il