Analysis of interatomic Contacts of Structural Units in PDB entry:
2BKA


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2BKA entry

There is 1 chain in PDB entry 2BKA (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 5ALA 236
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 11 helices in PDB entry 2BKA. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
5 17Right-handed alpha
Helix 2
2
A
28 42Right-handed alpha
Helix 3
3
A
59 65Right-handed 310
Helix 4
4
A
71 83Right-handed 310
Helix 5
5
A
95 122Right-handed alpha
Helix 6
6
A
141 156Right-handed alpha
Helix 7
7
A
174 177Right-handed 310
Helix 8
8
A
178 189Right-handed alpha
Helix 9
9
A
194 198Right-handed 310
Helix 10
10
A
203 215Right-handed alpha
Helix 11
11
A
227 234Right-handed alpha
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There are 2 sheets in PDB entry 2BKA. Click on sheet of interest to get list of strands forming it: AA, AB,

There are 7 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
66 69first strand
Strand 2
A
46 51parallel
Strand 3
A
20 24parallel
Strand 4
A
87 90parallel
Strand 5
A
126 130parallel
Strand 6
A
161 166parallel
Strand 7
A
222 226parallel
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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
169 171first strand
Strand 2
A
200 202parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il