Analysis of interatomic Contacts of Structural Units in PDB entry:
2BKE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2BKE entry

There is 1 chain in PDB entry 2BKE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 10GLU 324
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 2BKE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
21 31Right-handed alpha
Helix 2
2
A
35 42Right-handed alpha
Helix 3
3
A
43 51Right-handed alpha
Helix 4
4
A
54 69Right-handed alpha
Helix 5
5
A
75 81Right-handed alpha
Helix 6
6
A
93 100Right-handed alpha
Helix 7
7
A
119 131Right-handed alpha
Helix 8
8
A
134 138Right-handed 310
Helix 9
9
A
154 164Right-handed alpha
Helix 10
10
A
168 175Right-handed alpha
Helix 11
11
A
183 201Right-handed alpha
Helix 12
12
A
213 220Right-handed alpha
Helix 13
13
A
224 248Right-handed alpha
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There are 2 sheets in PDB entry 2BKE. Click on sheet of interest to get list of strands forming it: AA, AB,

There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
88 89first strand
Strand 2
A
104 105anti-parallel
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There are 9 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
176 180first strand
Strand 2
A
143 148parallel
Strand 3
A
204 210parallel
Strand 4
A
250 256parallel
Strand 5
A
109 114parallel
Strand 6
A
282 289parallel
Strand 7
A
294 301anti-parallel
Strand 8
A
309 314anti-parallel
Strand 9
A
319 321anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il