Analysis of interatomic Contacts of Structural Units in PDB entry:
2BRK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2BRK entry

There is 1 chain in PDB entry 2BRK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 1LYS 531
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 27 helices in PDB entry 2BRK. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
41 43Right-handed 310
Helix 2
2
A
44 53Right-handed alpha
Helix 3
3
A
61 76Right-handed alpha
Helix 4
4
A
84 91Right-handed alpha
Helix 5
5
A
104 110Right-handed alpha
Helix 6
6
A
112 129Right-handed alpha
Helix 7
7
A
164 180Right-handed alpha
Helix 8
8
A
181 188Right-handed alpha
Helix 9
9
A
192 195Right-handed 310
Helix 10
10
A
196 210Right-handed alpha
Helix 11
11
A
223 228Right-handed alpha
Helix 12
12
A
229 241Right-handed alpha
Helix 13
13
A
246 260Right-handed alpha
Helix 14
14
A
286 306Right-handed alpha
Helix 15
15
A
328 346Right-handed alpha
Helix 16
16
A
359 363Right-handed 310
Helix 17
17
A
388 401Right-handed alpha
Helix 18
18
A
406 415Right-handed alpha
Helix 19
19
A
418 424Right-handed alpha
Helix 20
20
A
424 436Right-handed alpha
Helix 21
21
A
455 457Right-handed 310
Helix 22
22
A
458 468Right-handed alpha
Helix 23
23
A
469 473Right-handed 310
Helix 24
24
A
478 493Right-handed alpha
Helix 25
25
A
496 514Right-handed alpha
Helix 26
26
A
515 526Right-handed alpha
Helix 27
27
A
527 530Right-handed 310
Back to top of page

There are 5 sheets in PDB entry 2BRK. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE,

There are 5 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4 6first strand
Strand 2
A
273 277anti-parallel
Strand 3
A
264 267anti-parallel
Strand 4
A
136 140parallel
Strand 5
A
159 163anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
37 39first strand
Strand 2
A
144 146anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
214 220first strand
Strand 2
A
319 325anti-parallel
Strand 3
A
309 316anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
368 374first strand
Strand 2
A
380 386anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
443 447first strand
Strand 2
A
450 454anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il