Analysis of interatomic Contacts of Structural Units in PDB entry:
2BVD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2BVD entry

There is 1 chain in PDB entry 2BVD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 8LEU 283
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 9 helices in PDB entry 2BVD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
20 32Right-handed alpha
Helix 2
2
A
47 61Right-handed alpha
Helix 3
3
A
75 81Right-handed alpha
Helix 4
4
A
84 99Right-handed alpha
Helix 5
5
A
127 145Right-handed alpha
Helix 6
6
A
173 177Right-handed 310
Helix 7
7
A
199 212Right-handed alpha
Helix 8
8
A
231 247Right-handed alpha
Helix 9
9
A
269 281Right-handed alpha
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There is 1 sheet ( AA) in PDB entry 2BVD.

There are 9 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
150 152first strand
Strand 2
A
102 106parallel
Strand 3
A
64 70parallel
Strand 4
A
37 43parallel
Strand 5
A
10 14parallel
Strand 6
A
250 256parallel
Strand 7
A
218 225parallel
Strand 8
A
180 186parallel
Strand 9
A
156 157parallel
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