Analysis of interatomic Contacts of Structural Units in PDB entry:
2C5V


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2C5V entry

There are 8 chains in PDB entry 2C5V (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1LEU 296
B
 VAL 175LEU 432
C
 MET 1LEU 296
D
 VAL 175LEU 432
F
 ALA 501ALA 502
F
 ARG 504ILE 507
H
 ALA 501ALA 502
H
 ARG 504ILE 507
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 54 helices in PDB entry 2C5V. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
45 58Right-handed alpha
Helix 2
2
A
87 95Right-handed alpha
Helix 3
3
A
100 120Right-handed alpha
Helix 4
4
A
129 131Right-handed 310
Helix 5
5
A
170 175Right-handed alpha
Helix 6
6
A
181 199Right-handed alpha
Helix 7
7
A
207 220Right-handed alpha
Helix 8
8
A
229 233Right-handed 310
Helix 9
9
A
247 251Right-handed 310
Helix 10
10
A
256 267Right-handed alpha
Helix 11
11
A
276 283Right-handed alpha
Helix 12
12
A
284 287Right-handed 310
Helix 13
13
B
178 193Right-handed alpha
Helix 14
14
B
196 203Right-handed 310
Helix 15
15
B
207 225Right-handed alpha
Helix 16
16
B
228 243Right-handed alpha
Helix 17
17
B
249 269Right-handed alpha
Helix 18
18
B
274 281Right-handed alpha
Helix 19
19
B
287 302Right-handed alpha
Helix 20
20
B
310 319Right-handed alpha
Helix 21
21
B
320 322Right-handed 310
Helix 22
22
B
326 341Right-handed alpha
Helix 23
23
B
343 348Right-handed alpha
Helix 24
24
B
351 369Right-handed alpha
Helix 25
25
B
373 381Right-handed alpha
Helix 26
26
B
383 401Right-handed alpha
Helix 27
27
B
402 404Right-handed 310
Helix 28
28
B
407 413Right-handed alpha
Helix 29
29
B
414 419Right-handed 310
Helix 30
30
C
45 57Right-handed alpha
Helix 31
31
C
87 93Right-handed alpha
Helix 32
32
C
100 120Right-handed alpha
Helix 33
33
C
170 175Right-handed alpha
Helix 34
34
C
181 199Right-handed alpha
Helix 35
35
C
207 220Right-handed alpha
Helix 36
36
C
229 233Right-handed 310
Helix 37
37
C
256 267Right-handed alpha
Helix 38
38
C
276 282Right-handed alpha
Helix 39
39
C
283 287Right-handed 310
Helix 40
40
D
178 193Right-handed alpha
Helix 41
41
D
207 225Right-handed alpha
Helix 42
42
D
228 243Right-handed alpha
Helix 43
43
D
249 269Right-handed alpha
Helix 44
44
D
274 281Right-handed alpha
Helix 45
45
D
287 302Right-handed alpha
Helix 46
46
D
310 320Right-handed alpha
Helix 47
47
D
326 341Right-handed alpha
Helix 48
48
D
343 348Right-handed alpha
Helix 49
49
D
351 369Right-handed alpha
Helix 50
50
D
373 381Right-handed alpha
Helix 51
51
D
387 401Right-handed alpha
Helix 52
52
D
402 404Right-handed 310
Helix 53
53
D
407 413Right-handed alpha
Helix 54
54
D
414 419Right-handed 310
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There are 6 sheets in PDB entry 2C5V. Click on sheet of interest to get list of strands forming it: AA, AB, AC, CA, CB, CC,

There are 5 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4 9first strand
Strand 2
A
18 23anti-parallel
Strand 3
A
29 35anti-parallel
Strand 4
A
76 81anti-parallel
Strand 5
A
66 71anti-parallel
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There are 3 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
85 86first strand
Strand 2
A
133 135anti-parallel
Strand 3
A
141 143anti-parallel
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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
123 124first strand
Strand 2
A
150 151anti-parallel
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There are 5 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
4 11first strand
Strand 2
C
18 23anti-parallel
Strand 3
C
29 36anti-parallel
Strand 4
C
75 81anti-parallel
Strand 5
C
66 71anti-parallel
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There are 3 strands in CB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
85 86first strand
Strand 2
C
133 135anti-parallel
Strand 3
C
141 143anti-parallel
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There are 2 strands in CC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
123 124first strand
Strand 2
C
150 151anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il