Analysis of interatomic Contacts of Structural Units in PDB entry:
2C6E


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2C6E entry

There are 2 chains in PDB entry 2C6E (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 126LYS 388
B
 GLN 126SER 387
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 2C6E. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
128 130Right-handed 310
Helix 2
2
A
165 169Right-handed alpha
Helix 3
3
A
174 185Right-handed alpha
Helix 4
4
A
216 225Right-handed alpha
Helix 5
5
A
228 248Right-handed alpha
Helix 6
6
A
257 259Right-handed 310
Helix 7
7
A
291 295Right-handed 310
Helix 8
8
A
296 301Right-handed alpha
Helix 9
9
A
308 324Right-handed alpha
Helix 10
10
A
332 343Right-handed alpha
Helix 11
11
A
352 363Right-handed alpha
Helix 12
12
A
366 370Right-handed 310
Helix 13
13
A
372 378Right-handed alpha
Helix 14
14
A
379 386Right-handed alpha
Helix 15
15
B
128 130Right-handed 310
Helix 16
16
B
165 171Right-handed alpha
Helix 17
17
B
174 185Right-handed alpha
Helix 18
18
B
216 225Right-handed alpha
Helix 19
19
B
228 249Right-handed alpha
Helix 20
20
B
257 259Right-handed 310
Helix 21
21
B
291 295Right-handed 310
Helix 22
22
B
296 301Right-handed alpha
Helix 23
23
B
308 324Right-handed alpha
Helix 24
24
B
332 342Right-handed alpha
Helix 25
25
B
352 363Right-handed alpha
Helix 26
26
B
366 370Right-handed 310
Helix 27
27
B
372 377Right-handed alpha
Helix 28
28
B
379 385Right-handed alpha
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There are 4 sheets in PDB entry 2C6E. Click on sheet of interest to get list of strands forming it: AA, AB, BA, BB,

There are 5 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
132 140first strand
Strand 2
A
144 151anti-parallel
Strand 3
A
157 164anti-parallel
Strand 4
A
204 209anti-parallel
Strand 5
A
195 200anti-parallel
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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
261 263first strand
Strand 2
A
269 271anti-parallel
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There are 5 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
132 140first strand
Strand 2
B
144 151anti-parallel
Strand 3
B
157 164anti-parallel
Strand 4
B
204 209anti-parallel
Strand 5
B
195 200anti-parallel
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There are 2 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
261 263first strand
Strand 2
B
269 271anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il