Analysis of interatomic Contacts of Structural Units in PDB entry:
2CLJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2CLJ entry

There is 1 chain in PDB entry 2CLJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 4THR 543
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 2CLJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
136 142Right-handed alpha
Helix 2
2
A
154 158Right-handed alpha
Helix 3
3
A
171 190Right-handed alpha
Helix 4
4
A
204 214Right-handed alpha
Helix 5
5
A
241 255Right-handed alpha
Helix 6
6
A
266 275Right-handed alpha
Helix 7
7
A
278 284Right-handed alpha
Helix 8
8
A
285 288Right-handed 310
Helix 9
9
A
312 318Right-handed alpha
Helix 10
10
A
336 341Right-handed 310
Helix 11
11
A
356 366Right-handed alpha
Helix 12
12
A
372 382Right-handed alpha
Helix 13
13
A
391 406Right-handed alpha
Helix 14
14
A
408 421Right-handed alpha
Helix 15
15
A
441 443Right-handed 310
Helix 16
16
A
451 454Right-handed alpha
Helix 17
17
A
467 486Right-handed alpha
Helix 18
18
A
526 533Right-handed alpha
Helix 19
19
A
535 542Right-handed alpha
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There are 3 sheets in PDB entry 2CLJ. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
9 12first strand
Strand 2
A
15 18anti-parallel
Strand 3
A
59 61parallel
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There are 9 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
20 24first strand
Strand 2
A
27 36anti-parallel
Strand 3
A
98 103anti-parallel
Strand 4
A
145 149anti-parallel
Strand 5
A
114 118parallel
Strand 6
A
197 202parallel
Strand 7
A
224 228parallel
Strand 8
A
326 331parallel
Strand 9
A
425 430parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
509 513first strand
Strand 2
A
520 522anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il