Analysis of interatomic Contacts of Structural Units in PDB entry:
2CMW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2CMW entry

There are 2 chains in PDB entry 2CMW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 44PRO 109
A
 GLY 111SER 339
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 10 helices in PDB entry 2CMW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
83 95Right-handed alpha
Helix 2
2
A
124 132Right-handed alpha
Helix 3
3
A
137 158Right-handed alpha
Helix 4
4
A
166 168Right-handed 310
Helix 5
5
A
219 224Right-handed alpha
Helix 6
6
A
229 247Right-handed alpha
Helix 7
7
A
258 273Right-handed alpha
Helix 8
8
A
274 279Right-handed alpha
Helix 9
9
A
283 296Right-handed alpha
Helix 10
10
A
303 318Right-handed alpha
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There are 3 sheets in PDB entry 2CMW. Click on sheet of interest to get list of strands forming it: AA, AB, AC,

There are 5 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
49 52first strand
Strand 2
A
57 62anti-parallel
Strand 3
A
69 76anti-parallel
Strand 4
A
113 119anti-parallel
Strand 5
A
104 110anti-parallel
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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
160 161first strand
Strand 2
A
192 193anti-parallel
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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
170 172first strand
Strand 2
A
183 185anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il