Analysis of interatomic Contacts of Structural Units in PDB entry:
2COD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2COD entry

There is 1 chain in PDB entry 2COD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
GLY 1GLY 115
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There is 1 helix in PDB entry 2COD. Click on helix number for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
84 101Right-handed alpha
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There is 1 sheet ( A) in PDB entry 2COD.

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
51 53first strand
Strand 2
A
36 40anti-parallel
Strand 3
A
26 32anti-parallel
Strand 4
A
10 16anti-parallel
Strand 5
A
76 80anti-parallel
Strand 6
A
67 71anti-parallel
Strand 7
A
59 62anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il