Analysis of interatomic Contacts of Structural Units in PDB entry:
2CVD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2CVD entry

There are 4 chains in PDB entry 2CVD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
PRO 2LEU 199
B
PRO 2LEU 199
C
PRO 2LEU 199
D
PRO 2LEU 199
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 42 helices in PDB entry 2CVD. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
12 14Right-handed 310
Helix 2
2
A
15 25Right-handed alpha
Helix 3
3
A
35 37Right-handed 310
Helix 4
4
A
38 44Right-handed alpha
Helix 5
5
A
63 73Right-handed alpha
Helix 6
6
A
81 101Right-handed alpha
Helix 7
7
A
108 122Right-handed alpha
Helix 8
8
A
122 136Right-handed alpha
Helix 9
9
A
147 164Right-handed alpha
Helix 10
10
A
171 183Right-handed alpha
Helix 11
11
A
184 194Right-handed alpha
Helix 12
12
B
15 25Right-handed alpha
Helix 13
13
B
38 44Right-handed alpha
Helix 14
14
B
63 73Right-handed alpha
Helix 15
15
B
81 102Right-handed alpha
Helix 16
16
B
108 122Right-handed alpha
Helix 17
17
B
122 136Right-handed alpha
Helix 18
18
B
147 164Right-handed alpha
Helix 19
19
B
171 183Right-handed alpha
Helix 20
20
B
184 194Right-handed alpha
Helix 21
21
C
12 14Right-handed 310
Helix 22
22
C
15 26Right-handed alpha
Helix 23
23
C
35 38Right-handed 310
Helix 24
24
C
39 44Right-handed alpha
Helix 25
25
C
63 73Right-handed alpha
Helix 26
26
C
81 100Right-handed alpha
Helix 27
27
C
108 123Right-handed alpha
Helix 28
28
C
123 136Right-handed alpha
Helix 29
29
C
147 164Right-handed alpha
Helix 30
30
C
171 184Right-handed alpha
Helix 31
31
C
184 194Right-handed alpha
Helix 32
32
D
12 14Right-handed 310
Helix 33
33
D
15 26Right-handed alpha
Helix 34
34
D
35 37Right-handed 310
Helix 35
35
D
38 44Right-handed alpha
Helix 36
36
D
63 73Right-handed alpha
Helix 37
37
D
81 100Right-handed alpha
Helix 38
38
D
108 123Right-handed alpha
Helix 39
39
D
123 136Right-handed alpha
Helix 40
40
D
147 164Right-handed alpha
Helix 41
41
D
171 184Right-handed alpha
Helix 42
42
D
184 194Right-handed alpha
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There are 4 sheets in PDB entry 2CVD. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
30 34first strand
Strand 2
A
4 9parallel
Strand 3
A
53 56anti-parallel
Strand 4
A
59 62anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
30 34first strand
Strand 2
B
4 9parallel
Strand 3
B
53 56anti-parallel
Strand 4
B
59 62anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
30 34first strand
Strand 2
C
4 9parallel
Strand 3
C
53 56anti-parallel
Strand 4
C
59 62anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
30 34first strand
Strand 2
D
4 9parallel
Strand 3
D
53 56anti-parallel
Strand 4
D
59 62anti-parallel
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