Analysis of interatomic Contacts of Structural Units in PDB entry:
2D10


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2D10 entry

There are 8 chains in PDB entry 2D10 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 3PRO 297
B
 LYS 3THR 299
C
 LYS 3THR 299
D
 LYS 3THR 299
E
 SER 339LEU 358
F
 SER 339LEU 358
G
 SER 339LEU 358
H
 SER 339LEU 358
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 45 helices in PDB entry 2D10. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
25 38Right-handed alpha
Helix 2
2
A
41 43Right-handed 310
Helix 3
3
A
64 68Right-handed 310
Helix 4
4
A
88 93Right-handed alpha
Helix 5
5
A
95 112Right-handed alpha
Helix 6
6
A
118 135Right-handed alpha
Helix 7
7
A
154 161Right-handed alpha
Helix 8
8
A
164 178Right-handed alpha
Helix 9
9
A
183 196Right-handed alpha
Helix 10
10
A
273 294Right-handed alpha
Helix 11
11
B
25 38Right-handed alpha
Helix 12
12
B
41 43Right-handed 310
Helix 13
13
B
64 68Right-handed 310
Helix 14
14
B
88 93Right-handed alpha
Helix 15
15
B
95 112Right-handed alpha
Helix 16
16
B
118 135Right-handed alpha
Helix 17
17
B
154 160Right-handed alpha
Helix 18
18
B
164 179Right-handed alpha
Helix 19
19
B
183 196Right-handed alpha
Helix 20
20
B
273 296Right-handed alpha
Helix 21
21
C
25 38Right-handed alpha
Helix 22
22
C
41 43Right-handed 310
Helix 23
23
C
64 68Right-handed 310
Helix 24
24
C
88 93Right-handed alpha
Helix 25
25
C
95 112Right-handed alpha
Helix 26
26
C
118 135Right-handed alpha
Helix 27
27
C
154 160Right-handed alpha
Helix 28
28
C
164 177Right-handed alpha
Helix 29
29
C
178 180Right-handed 310
Helix 30
30
C
183 196Right-handed alpha
Helix 31
31
C
273 294Right-handed alpha
Helix 32
32
D
25 38Right-handed alpha
Helix 33
33
D
41 43Right-handed 310
Helix 34
34
D
64 68Right-handed 310
Helix 35
35
D
88 93Right-handed alpha
Helix 36
36
D
95 112Right-handed alpha
Helix 37
37
D
118 135Right-handed alpha
Helix 38
38
D
154 160Right-handed alpha
Helix 39
39
D
164 178Right-handed alpha
Helix 40
40
D
183 196Right-handed alpha
Helix 41
41
D
273 294Right-handed alpha
Helix 42
42
E
347 356Right-handed alpha
Helix 43
43
F
347 358Right-handed alpha
Helix 44
44
G
347 358Right-handed alpha
Helix 45
45
H
347 358Right-handed alpha
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There are 12 sheets in PDB entry 2D10. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
15 20first strand
Strand 2
A
5 10anti-parallel
Strand 3
A
76 82parallel
Strand 4
A
45 50anti-parallel
Strand 5
A
56 58anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
204 209first strand
Strand 2
A
215 220anti-parallel
Strand 3
A
224 229anti-parallel
Strand 4
A
236 241anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
245 251first strand
Strand 2
A
254 259anti-parallel
Strand 3
A
267 270anti-parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
14 20first strand
Strand 2
B
5 11anti-parallel
Strand 3
B
76 82parallel
Strand 4
B
45 50anti-parallel
Strand 5
B
56 58anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
204 209first strand
Strand 2
B
215 220anti-parallel
Strand 3
B
224 229anti-parallel
Strand 4
B
238 241anti-parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
245 251first strand
Strand 2
B
254 259anti-parallel
Strand 3
B
267 270anti-parallel
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There are 5 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
15 20first strand
Strand 2
C
5 10anti-parallel
Strand 3
C
76 82parallel
Strand 4
C
45 50anti-parallel
Strand 5
C
56 58anti-parallel
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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
204 209first strand
Strand 2
C
215 220anti-parallel
Strand 3
C
224 229anti-parallel
Strand 4
C
238 241anti-parallel
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There are 3 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
245 251first strand
Strand 2
C
254 259anti-parallel
Strand 3
C
267 270anti-parallel
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There are 5 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
15 20first strand
Strand 2
D
5 10anti-parallel
Strand 3
D
76 82parallel
Strand 4
D
45 50anti-parallel
Strand 5
D
56 58anti-parallel
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There are 4 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
204 209first strand
Strand 2
D
215 220anti-parallel
Strand 3
D
224 229anti-parallel
Strand 4
D
236 241anti-parallel
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There are 3 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
245 251first strand
Strand 2
D
254 259anti-parallel
Strand 3
D
267 270anti-parallel
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