Analysis of interatomic Contacts of Structural Units in PDB entry:
2D11

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 2D11 entry

There are 8 chains in PDB entry 2D11 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 3	LYS 296
B	LYS 3	LYS 296
C	LYS 3	LYS 296
D	LYS 3	LYS 296
E	LYS 320	PHE 337
F	LYS 320	PHE 337
G	ARG 321	PHE 337
H	ARG 321	PHE 337

There are 43 helices in PDB entry 2D11. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	25	38	Right-handed alpha
Helix 2	2	A	41	43	Right-handed 310
Helix 3	3	A	64	68	Right-handed 310
Helix 4	4	A	88	93	Right-handed alpha
Helix 5	5	A	95	112	Right-handed alpha
Helix 6	6	A	118	135	Right-handed alpha
Helix 7	7	A	154	160	Right-handed alpha
Helix 8	8	A	164	179	Right-handed alpha
Helix 9	9	A	183	196	Right-handed alpha
Helix 10	10	A	273	294	Right-handed alpha
Helix 11	11	B	25	38	Right-handed alpha
Helix 12	12	B	41	43	Right-handed 310
Helix 13	13	B	64	68	Right-handed 310
Helix 14	14	B	88	93	Right-handed alpha
Helix 15	15	B	95	112	Right-handed alpha
Helix 16	16	B	118	135	Right-handed alpha
Helix 17	17	B	154	159	Right-handed alpha
Helix 18	18	B	164	179	Right-handed alpha
Helix 19	19	B	183	196	Right-handed alpha
Helix 20	20	B	273	294	Right-handed alpha
Helix 21	21	C	25	38	Right-handed alpha
Helix 22	22	C	65	69	Right-handed 310
Helix 23	23	C	88	93	Right-handed alpha
Helix 24	24	C	95	112	Right-handed alpha
Helix 25	25	C	118	135	Right-handed alpha
Helix 26	26	C	154	159	Right-handed alpha
Helix 27	27	C	164	178	Right-handed alpha
Helix 28	28	C	183	196	Right-handed alpha
Helix 29	29	C	273	296	Right-handed alpha
Helix 30	30	D	25	38	Right-handed alpha
Helix 31	31	D	41	43	Right-handed 310
Helix 32	32	D	64	68	Right-handed 310
Helix 33	33	D	88	93	Right-handed alpha
Helix 34	34	D	95	112	Right-handed alpha
Helix 35	35	D	118	135	Right-handed alpha
Helix 36	36	D	154	161	Right-handed alpha
Helix 37	37	D	164	178	Right-handed alpha
Helix 38	38	D	183	197	Right-handed alpha
Helix 39	39	D	273	294	Right-handed alpha
Helix 40	40	E	326	337	Right-handed alpha
Helix 41	41	F	326	337	Right-handed alpha
Helix 42	42	G	326	337	Right-handed alpha
Helix 43	43	H	326	337	Right-handed alpha

There are 12 sheets in PDB entry 2D11. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	15	20	first strand
Strand 2	A	5	10	anti-parallel
Strand 3	A	76	82	parallel
Strand 4	A	45	50	anti-parallel
Strand 5	A	56	58	anti-parallel

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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	204	209	first strand
Strand 2	A	215	221	anti-parallel
Strand 3	A	224	229	anti-parallel
Strand 4	A	232	241	anti-parallel

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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	245	251	first strand
Strand 2	A	254	259	anti-parallel
Strand 3	A	267	270	anti-parallel

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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	15	20	first strand
Strand 2	B	5	10	anti-parallel
Strand 3	B	76	82	parallel
Strand 4	B	45	50	anti-parallel
Strand 5	B	56	58	anti-parallel

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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	204	209	first strand
Strand 2	B	215	220	anti-parallel
Strand 3	B	224	229	anti-parallel
Strand 4	B	232	241	anti-parallel

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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	245	251	first strand
Strand 2	B	254	259	anti-parallel
Strand 3	B	267	270	anti-parallel

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There are 5 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	15	20	first strand
Strand 2	C	5	10	anti-parallel
Strand 3	C	76	82	parallel
Strand 4	C	45	50	anti-parallel
Strand 5	C	56	58	anti-parallel

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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	204	209	first strand
Strand 2	C	215	220	anti-parallel
Strand 3	C	224	229	anti-parallel
Strand 4	C	238	241	anti-parallel

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There are 3 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	245	250	first strand
Strand 2	C	254	259	anti-parallel
Strand 3	C	267	270	anti-parallel

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There are 5 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	14	20	first strand
Strand 2	D	5	11	anti-parallel
Strand 3	D	76	82	parallel
Strand 4	D	45	50	anti-parallel
Strand 5	D	56	58	anti-parallel

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There are 4 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	204	209	first strand
Strand 2	D	215	221	anti-parallel
Strand 3	D	224	229	anti-parallel
Strand 4	D	238	241	anti-parallel

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There are 3 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	245	251	first strand
Strand 2	D	254	259	anti-parallel
Strand 3	D	267	270	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 2D11

Analysis of interatomic Contacts of Structural Units in PDB entry:
2D11