Analysis of interatomic Contacts of Structural Units in PDB entry:
2D24


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2D24 entry

There are 2 chains in PDB entry 2D24 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 1THR 436
B
 ALA 501THR 936
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 40 helices in PDB entry 2D24. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
4 11Right-handed alpha
Helix 2
2
A
21 25Right-handed 310
Helix 3
3
A
27 38Right-handed alpha
Helix 4
4
A
48 53Right-handed alpha
Helix 5
5
A
61 74Right-handed alpha
Helix 6
6
A
90 95Right-handed alpha
Helix 7
7
A
97 116Right-handed alpha
Helix 8
8
A
143 148Right-handed 310
Helix 9
9
A
149 162Right-handed alpha
Helix 10
10
A
179 196Right-handed alpha
Helix 11
11
A
217 227Right-handed alpha
Helix 12
12
A
243 256Right-handed alpha
Helix 13
13
A
269 273Right-handed 310
Helix 14
14
A
275 279Right-handed 310
Helix 15
15
A
290 301Right-handed alpha
Helix 16
16
A
326 330Right-handed 310
Helix 17
17
A
345 349Right-handed 310
Helix 18
18
A
385 388Right-handed 310
Helix 19
19
A
411 413Right-handed 310
Helix 20
20
A
428 431Right-handed 310
Helix 21
21
B
504 511Right-handed alpha
Helix 22
22
B
521 525Right-handed 310
Helix 23
23
B
527 538Right-handed alpha
Helix 24
24
B
548 553Right-handed alpha
Helix 25
25
B
561 574Right-handed alpha
Helix 26
26
B
590 595Right-handed alpha
Helix 27
27
B
597 616Right-handed alpha
Helix 28
28
B
643 648Right-handed 310
Helix 29
29
B
649 662Right-handed alpha
Helix 30
30
B
679 696Right-handed alpha
Helix 31
31
B
717 727Right-handed alpha
Helix 32
32
B
743 757Right-handed alpha
Helix 33
33
B
769 773Right-handed 310
Helix 34
34
B
775 779Right-handed 310
Helix 35
35
B
790 801Right-handed alpha
Helix 36
36
B
826 830Right-handed 310
Helix 37
37
B
845 849Right-handed 310
Helix 38
38
B
885 888Right-handed 310
Helix 39
39
B
911 913Right-handed 310
Helix 40
40
B
928 931Right-handed 310
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There are 12 sheets in PDB entry 2D24. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 10 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
207 208first strand
Strand 2
A
231 239parallel
Strand 3
A
260 265parallel
Strand 4
A
15 20parallel
Strand 5
A
40 43parallel
Strand 6
A
77 84parallel
Strand 7
A
122 127parallel
Strand 8
A
166 171parallel
Strand 9
A
201 204parallel
Strand 10
A
231 239parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
314 317first strand
Strand 2
A
433 436anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
323 325first strand
Strand 2
A
338 340anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
351 352first strand
Strand 2
A
358 360anti-parallel
Strand 3
A
364 368anti-parallel
Strand 4
A
377 381anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
390 392first strand
Strand 2
A
398 400anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
406 409first strand
Strand 2
A
420 423anti-parallel
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There are 10 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
707 708first strand
Strand 2
B
731 739parallel
Strand 3
B
760 765parallel
Strand 4
B
515 520parallel
Strand 5
B
540 543parallel
Strand 6
B
577 584parallel
Strand 7
B
622 627parallel
Strand 8
B
666 671parallel
Strand 9
B
701 704parallel
Strand 10
B
731 739parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
816 817first strand
Strand 2
B
933 934anti-parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
823 825first strand
Strand 2
B
838 840anti-parallel
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There are 4 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
851 852first strand
Strand 2
B
858 860anti-parallel
Strand 3
B
864 868anti-parallel
Strand 4
B
877 881anti-parallel
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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
890 892first strand
Strand 2
B
898 900anti-parallel
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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
906 909first strand
Strand 2
B
920 923anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il