Analysis of interatomic Contacts of Structural Units in PDB entry:
2D2C


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2D2C entry

There are 16 chains in PDB entry 2D2C (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
GLU 13PRO 214
B
LEU 18THR 154
C
TYR 1GLU 286
D
ASP 12VAL 179
E
MET 1ILE 32
F
MET 2GLU 36
G
LEU 4LEU 30
H
ILE 1LEU 27
N
GLU 13PRO 214
O
LEU 18THR 154
P
TYR 1GLU 286
Q
ASP 12VAL 179
R
MET 1ILE 32
S
MET 2GLU 36
T
LEU 4LEU 30
U
ILE 1LEU 27
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 72 helices in PDB entry 2D2C. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
35 54Right-handed alpha
Helix 2
2
A
65 75Right-handed alpha
Helix 3
3
A
78 106Right-handed alpha
Helix 4
4
A
118 136Right-handed alpha
Helix 5
5
A
142 147Right-handed alpha
Helix 6
6
A
153 157Right-handed 310
Helix 7
7
A
159 163Right-handed 310
Helix 8
8
A
166 171Right-handed alpha
Helix 9
9
A
178 189Right-handed alpha
Helix 10
10
A
190 206Right-handed alpha
Helix 11
11
B
39 58Right-handed alpha
Helix 12
12
B
82 91Right-handed alpha
Helix 13
13
B
93 103Right-handed alpha
Helix 14
14
B
105 110Right-handed alpha
Helix 15
15
B
110 115Right-handed alpha
Helix 16
16
B
126 134Right-handed alpha
Helix 17
17
B
137 142Right-handed alpha
Helix 18
18
C
2 8Right-handed 310
Helix 19
19
C
20 25Right-handed 310
Helix 20
20
C
91 97Right-handed alpha
Helix 21
21
C
251 275Right-handed alpha
Helix 22
22
C
276 280Right-handed 310
Helix 23
23
C
282 286Right-handed 310
Helix 24
24
D
18 21Right-handed 310
Helix 25
25
D
22 28Right-handed alpha
Helix 26
26
D
29 34Right-handed alpha
Helix 27
27
D
35 42Right-handed alpha
Helix 28
28
D
65 69Right-handed 310
Helix 29
29
E
1 3Right-handed 310
Helix 30
30
E
4 9Right-handed alpha
Helix 31
31
E
11 16Right-handed alpha
Helix 32
32
E
22 27Right-handed 310
Helix 33
33
F
3 27Right-handed alpha
Helix 34
34
G
10 15Right-handed alpha
Helix 35
35
G
17 23Right-handed alpha
Helix 36
36
H
3 8Right-handed alpha
Helix 37
37
H
9 26Right-handed alpha
Helix 38
38
N
35 54Right-handed alpha
Helix 39
39
N
65 74Right-handed alpha
Helix 40
40
N
78 106Right-handed alpha
Helix 41
41
N
115 136Right-handed alpha
Helix 42
42
N
141 147Right-handed alpha
Helix 43
43
N
153 157Right-handed 310
Helix 44
44
N
162 165Right-handed 310
Helix 45
45
N
166 171Right-handed alpha
Helix 46
46
N
176 189Right-handed alpha
Helix 47
47
N
190 206Right-handed alpha
Helix 48
48
O
39 58Right-handed alpha
Helix 49
49
O
81 91Right-handed alpha
Helix 50
50
O
93 103Right-handed alpha
Helix 51
51
O
105 110Right-handed alpha
Helix 52
52
O
110 115Right-handed alpha
Helix 53
53
O
129 134Right-handed alpha
Helix 54
54
O
140 144Right-handed 310
Helix 55
55
P
2 8Right-handed 310
Helix 56
56
P
20 25Right-handed 310
Helix 57
57
P
91 97Right-handed alpha
Helix 58
58
P
251 275Right-handed alpha
Helix 59
59
P
276 280Right-handed 310
Helix 60
60
Q
18 21Right-handed 310
Helix 61
61
Q
22 28Right-handed alpha
Helix 62
62
Q
29 34Right-handed alpha
Helix 63
63
Q
35 42Right-handed alpha
Helix 64
64
Q
65 69Right-handed 310
Helix 65
65
R
1 3Right-handed 310
Helix 66
66
R
4 9Right-handed alpha
Helix 67
67
R
11 16Right-handed alpha
Helix 68
68
S
3 27Right-handed alpha
Helix 69
69
T
10 15Right-handed alpha
Helix 70
70
T
17 23Right-handed alpha
Helix 71
71
U
3 8Right-handed alpha
Helix 72
72
U
9 26Right-handed alpha
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There are 8 sheets in PDB entry 2D2C. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
39 40first strand
Strand 2
C
243 249parallel
Strand 3
C
146 151anti-parallel
Strand 4
C
75 77anti-parallel
Strand 5
C
113 115anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
44 46first strand
Strand 2
C
131 133anti-parallel
Strand 3
C
83 84anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
184 185first strand
Strand 2
C
195 196anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
78 80first strand
Strand 2
D
90 92anti-parallel
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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
P
39 40first strand
Strand 2
P
243 249parallel
Strand 3
P
145 151anti-parallel
Strand 4
P
75 77anti-parallel
Strand 5
P
113 115anti-parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
P
44 46first strand
Strand 2
P
131 133anti-parallel
Strand 3
P
83 84anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
P
184 185first strand
Strand 2
P
195 196anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
Q
78 80first strand
Strand 2
Q
90 92anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il