Analysis of interatomic Contacts of Structural Units in PDB entry:
2DD7


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2DD7 entry

There are 4 chains in PDB entry 2DD7 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 2MET 54
A
 PHE 58ASP 218
B
 THR 2MET 54
B
 PHE 58ARG 217
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 8 helices in PDB entry 2DD7. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
46 54Right-handed 310
Helix 2
2
A
58 60Right-handed 310
Helix 3
3
A
70 77Right-handed alpha
Helix 4
4
A
123 128Right-handed alpha
Helix 5
5
B
46 54Right-handed 310
Helix 6
6
B
58 60Right-handed 310
Helix 7
7
B
70 77Right-handed alpha
Helix 8
8
B
123 127Right-handed 310
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There are 4 sheets in PDB entry 2DD7. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 11 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
62 63first strand
Strand 2
A
202 212parallel
Strand 3
A
31 38anti-parallel
Strand 4
A
17 28anti-parallel
Strand 5
A
4 14anti-parallel
Strand 6
A
107 117parallel
Strand 7
A
94 104anti-parallel
Strand 8
A
81 89anti-parallel
Strand 9
A
163 174anti-parallel
Strand 10
A
147 158anti-parallel
Strand 11
A
130 133anti-parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
62 63first strand
Strand 2
A
202 212parallel
Strand 3
A
188 198anti-parallel
Strand 4
A
136 143anti-parallel
Strand 5
A
147 158anti-parallel
Strand 6
A
130 133anti-parallel
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There are 11 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
62 63first strand
Strand 2
B
202 212parallel
Strand 3
B
31 38anti-parallel
Strand 4
B
17 28anti-parallel
Strand 5
B
4 14anti-parallel
Strand 6
B
107 117parallel
Strand 7
B
94 104anti-parallel
Strand 8
B
81 89anti-parallel
Strand 9
B
163 174anti-parallel
Strand 10
B
147 158anti-parallel
Strand 11
B
130 133anti-parallel
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There are 6 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
62 63first strand
Strand 2
B
202 212parallel
Strand 3
B
188 198anti-parallel
Strand 4
B
136 142anti-parallel
Strand 5
B
147 158anti-parallel
Strand 6
B
130 133anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il