Analysis of interatomic Contacts of Structural Units in PDB entry:
2DG5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2DG5 entry

There are 4 chains in PDB entry 2DG5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 37GLU 387
B
 THR 391TYR 580
C
 GLU 37GLU 387
D
 THR 391TYR 580
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 52 helices in PDB entry 2DG5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
55 68Right-handed alpha
Helix 2
2
A
71 87Right-handed alpha
Helix 3
3
A
134 140Right-handed alpha
Helix 4
4
A
141 145Right-handed 310
Helix 5
5
A
149 162Right-handed alpha
Helix 6
6
A
165 180Right-handed alpha
Helix 7
7
A
184 194Right-handed alpha
Helix 8
8
A
195 201Right-handed 310
Helix 9
9
A
202 209Right-handed alpha
Helix 10
10
A
224 238Right-handed alpha
Helix 11
11
A
239 244Right-handed alpha
Helix 12
12
A
245 258Right-handed alpha
Helix 13
13
A
263 270Right-handed alpha
Helix 14
14
A
295 308Right-handed alpha
Helix 15
15
A
311 316Right-handed alpha
Helix 16
16
A
319 341Right-handed alpha
Helix 17
17
A
350 355Right-handed alpha
Helix 18
18
A
356 365Right-handed alpha
Helix 19
19
A
374 378Right-handed 310
Helix 20
20
A
383 387Right-handed 310
Helix 21
21
B
420 424Right-handed 310
Helix 22
22
B
429 434Right-handed 310
Helix 23
23
B
483 485Right-handed 310
Helix 24
24
B
486 500Right-handed alpha
Helix 25
25
B
504 511Right-handed alpha
Helix 26
26
B
530 540Right-handed alpha
Helix 27
27
C
55 68Right-handed alpha
Helix 28
28
C
71 87Right-handed alpha
Helix 29
29
C
134 140Right-handed alpha
Helix 30
30
C
141 145Right-handed 310
Helix 31
31
C
149 162Right-handed alpha
Helix 32
32
C
165 180Right-handed alpha
Helix 33
33
C
184 194Right-handed alpha
Helix 34
34
C
195 201Right-handed 310
Helix 35
35
C
202 209Right-handed alpha
Helix 36
36
C
224 238Right-handed alpha
Helix 37
37
C
239 244Right-handed alpha
Helix 38
38
C
245 258Right-handed alpha
Helix 39
39
C
263 270Right-handed alpha
Helix 40
40
C
295 308Right-handed alpha
Helix 41
41
C
311 316Right-handed alpha
Helix 42
42
C
319 341Right-handed alpha
Helix 43
43
C
350 355Right-handed alpha
Helix 44
44
C
356 365Right-handed alpha
Helix 45
45
C
374 378Right-handed 310
Helix 46
46
C
383 387Right-handed 310
Helix 47
47
D
420 424Right-handed 310
Helix 48
48
D
429 434Right-handed 310
Helix 49
49
D
483 485Right-handed 310
Helix 50
50
D
486 500Right-handed alpha
Helix 51
51
D
504 511Right-handed alpha
Helix 52
52
D
530 540Right-handed alpha
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There are 10 sheets in PDB entry 2DG5. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
44 46first strand
Strand 2
B
564 568anti-parallel
Strand 3
B
554 558anti-parallel
Strand 4
B
474 479anti-parallel
Strand 5
B
467 471anti-parallel
Strand 6
A
285 289anti-parallel
Strand 7
A
278 282anti-parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
273 275first strand
Strand 2
A
108 113anti-parallel
Strand 3
A
96 102anti-parallel
Strand 4
B
403 409anti-parallel
Strand 5
B
392 397anti-parallel
Strand 6
A
50 53anti-parallel
Strand 7
B
576 579anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
181 182first strand
Strand 2
A
221 222anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
210 211first strand
Strand 2
A
214 215anti-parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
514 515first strand
Strand 2
B
523 525anti-parallel
Strand 3
B
544 546parallel
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There are 7 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
44 46first strand
Strand 2
D
564 568anti-parallel
Strand 3
D
554 558anti-parallel
Strand 4
D
474 479anti-parallel
Strand 5
D
467 471anti-parallel
Strand 6
C
285 289anti-parallel
Strand 7
C
278 282anti-parallel
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There are 7 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
273 275first strand
Strand 2
C
108 113anti-parallel
Strand 3
C
96 102anti-parallel
Strand 4
D
403 409anti-parallel
Strand 5
D
392 397anti-parallel
Strand 6
C
49 53anti-parallel
Strand 7
D
576 580anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
181 182first strand
Strand 2
C
221 222anti-parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
210 211first strand
Strand 2
C
214 215anti-parallel
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There are 3 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
514 515first strand
Strand 2
D
523 525anti-parallel
Strand 3
D
544 546parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il