Analysis of interatomic Contacts of Structural Units in PDB entry:
2DKH


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2DKH entry

There is 1 chain in PDB entry 2DKH (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ALA 639
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 2DKH. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
41 52Right-handed alpha
Helix 2
2
A
78 88Right-handed alpha
Helix 3
3
A
90 98Right-handed alpha
Helix 4
4
A
139 154Right-handed alpha
Helix 5
5
A
188 192Right-handed 310
Helix 6
6
A
211 217Right-handed alpha
Helix 7
7
A
289 302Right-handed alpha
Helix 8
8
A
348 350Right-handed 310
Helix 9
9
A
355 359Right-handed 310
Helix 10
10
A
362 381Right-handed alpha
Helix 11
11
A
385 388Right-handed 310
Helix 12
12
A
389 410Right-handed alpha
Helix 13
13
A
427 443Right-handed alpha
Helix 14
14
A
460 465Right-handed 310
Helix 15
15
A
490 493Right-handed 310
Helix 16
16
A
515 527Right-handed alpha
Helix 17
17
A
530 536Right-handed alpha
Helix 18
18
A
555 559Right-handed 310
Helix 19
19
A
560 564Right-handed 310
Helix 20
20
A
565 569Right-handed 310
Helix 21
21
A
594 599Right-handed alpha
Helix 22
22
A
625 635Right-handed alpha
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There are 7 sheets in PDB entry 2DKH. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
59 62first strand
Strand 2
A
32 38parallel
Strand 3
A
195 205parallel
Strand 4
A
180 186anti-parallel
Strand 5
A
164 171anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
59 62first strand
Strand 2
A
32 38parallel
Strand 3
A
195 205parallel
Strand 4
A
344 346parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
76 77first strand
Strand 2
A
135 137anti-parallel
Strand 3
A
99 101anti-parallel
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There are 7 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
117 124first strand
Strand 2
A
103 109anti-parallel
Strand 3
A
247 252parallel
Strand 4
A
255 261anti-parallel
Strand 5
A
268 273anti-parallel
Strand 6
A
230 239anti-parallel
Strand 7
A
306 317anti-parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
222 223first strand
Strand 2
A
322 323anti-parallel
Strand 3
A
352 353anti-parallel
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There are 7 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
486 488first strand
Strand 2
A
477 480anti-parallel
Strand 3
A
583 585anti-parallel
Strand 4
A
546 551parallel
Strand 5
A
499 504parallel
Strand 6
A
607 611anti-parallel
Strand 7
A
617 621anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
571 572first strand
Strand 2
A
577 578anti-parallel
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