Analysis of interatomic Contacts of Structural Units in PDB entry:
2DKJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2DKJ entry

There are 2 chains in PDB entry 2DKJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 6PRO 407
B
 LYS 6PRO 407
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 44 helices in PDB entry 2DKJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
8 24Right-handed alpha
Helix 2
2
A
36 44Right-handed alpha
Helix 3
3
A
45 50Right-handed 310
Helix 4
4
A
64 83Right-handed alpha
Helix 5
5
A
93 106Right-handed alpha
Helix 6
6
A
117 120Right-handed 310
Helix 7
7
A
122 126Right-handed 310
Helix 8
8
A
130 136Right-handed alpha
Helix 9
9
A
151 163Right-handed alpha
Helix 10
10
A
179 191Right-handed alpha
Helix 11
11
A
201 207Right-handed alpha
Helix 12
12
A
225 229Right-handed 310
Helix 13
13
A
240 252Right-handed alpha
Helix 14
14
A
260 276Right-handed alpha
Helix 15
15
A
276 300Right-handed alpha
Helix 16
16
A
306 308Right-handed 310
Helix 17
17
A
319 322Right-handed 310
Helix 18
18
A
324 335Right-handed alpha
Helix 19
19
A
361 367Right-handed alpha
Helix 20
20
A
370 372Right-handed 310
Helix 21
21
A
373 388Right-handed alpha
Helix 22
22
A
390 403Right-handed alpha
Helix 23
23
B
8 25Right-handed alpha
Helix 24
24
B
36 44Right-handed alpha
Helix 25
25
B
45 50Right-handed 310
Helix 26
26
B
64 83Right-handed alpha
Helix 27
27
B
93 106Right-handed alpha
Helix 28
28
B
117 120Right-handed 310
Helix 29
29
B
122 126Right-handed 310
Helix 30
30
B
130 136Right-handed alpha
Helix 31
31
B
151 163Right-handed alpha
Helix 32
32
B
179 190Right-handed alpha
Helix 33
33
B
201 207Right-handed alpha
Helix 34
34
B
225 229Right-handed 310
Helix 35
35
B
240 252Right-handed alpha
Helix 36
36
B
260 275Right-handed alpha
Helix 37
37
B
276 299Right-handed alpha
Helix 38
38
B
306 308Right-handed 310
Helix 39
39
B
319 322Right-handed 310
Helix 40
40
B
324 334Right-handed alpha
Helix 41
41
B
361 367Right-handed alpha
Helix 42
42
B
370 372Right-handed 310
Helix 43
43
B
373 388Right-handed alpha
Helix 44
44
B
390 403Right-handed alpha
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There are 8 sheets in PDB entry 2DKJ. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
26 27first strand
Strand 2
A
337 338parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
54 55first strand
Strand 2
A
58 59anti-parallel
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There are 7 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
86 88first strand
Strand 2
A
234 238anti-parallel
Strand 3
A
219 223anti-parallel
Strand 4
A
193 197parallel
Strand 5
A
166 169parallel
Strand 6
A
111 115parallel
Strand 7
A
137 141parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
303 304first strand
Strand 2
A
313 317anti-parallel
Strand 3
A
356 360anti-parallel
Strand 4
A
340 341anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
26 27first strand
Strand 2
B
337 338parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
54 55first strand
Strand 2
B
58 59anti-parallel
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There are 7 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
86 88first strand
Strand 2
B
234 238anti-parallel
Strand 3
B
219 223anti-parallel
Strand 4
B
193 197parallel
Strand 5
B
166 169parallel
Strand 6
B
111 115parallel
Strand 7
B
137 141parallel
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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
303 304first strand
Strand 2
B
313 317anti-parallel
Strand 3
B
356 360anti-parallel
Strand 4
B
340 342anti-parallel
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