Analysis of interatomic Contacts of Structural Units in PDB entry:
2DQM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2DQM entry

There is 1 chain in PDB entry 2DQM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 4ALA 870
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 38 helices in PDB entry 2DQM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
11 13Right-handed 310
Helix 2
2
A
99 103Right-handed 310
Helix 3
3
A
124 128Right-handed 310
Helix 4
4
A
183 187Right-handed 310
Helix 5
5
A
219 222Right-handed 310
Helix 6
6
A
223 242Right-handed alpha
Helix 7
7
A
274 276Right-handed 310
Helix 8
8
A
284 301Right-handed alpha
Helix 9
9
A
312 314Right-handed 310
Helix 10
10
A
315 335Right-handed alpha
Helix 11
11
A
336 351Right-handed alpha
Helix 12
12
A
351 357Right-handed alpha
Helix 13
13
A
371 376Right-handed 310
Helix 14
14
A
377 412Right-handed alpha
Helix 15
15
A
417 430Right-handed alpha
Helix 16
16
A
437 442Right-handed alpha
Helix 17
17
A
534 537Right-handed 310
Helix 18
18
A
547 558Right-handed alpha
Helix 19
19
A
560 584Right-handed alpha
Helix 20
20
A
592 605Right-handed alpha
Helix 21
21
A
609 617Right-handed alpha
Helix 22
22
A
621 627Right-handed alpha
Helix 23
23
A
633 652Right-handed alpha
Helix 24
24
A
652 663Right-handed alpha
Helix 25
25
A
671 689Right-handed alpha
Helix 26
26
A
692 707Right-handed alpha
Helix 27
27
A
709 723Right-handed alpha
Helix 28
28
A
727 740Right-handed alpha
Helix 29
29
A
742 755Right-handed alpha
Helix 30
30
A
760 768Right-handed alpha
Helix 31
31
A
769 771Right-handed 310
Helix 32
32
A
778 793Right-handed alpha
Helix 33
33
A
793 798Right-handed alpha
Helix 34
34
A
802 819Right-handed alpha
Helix 35
35
A
819 832Right-handed alpha
Helix 36
36
A
833 836Right-handed 310
Helix 37
37
A
837 853Right-handed alpha
Helix 38
38
A
858 870Right-handed alpha
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There are 9 sheets in PDB entry 2DQM. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
8 9first strand
Strand 2
A
368 369anti-parallel
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There are 8 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
69 70first strand
Strand 2
A
60 66anti-parallel
Strand 3
A
89 98anti-parallel
Strand 4
A
34 44anti-parallel
Strand 5
A
18 28anti-parallel
Strand 6
A
140 148parallel
Strand 7
A
171 177anti-parallel
Strand 8
A
160 166anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
52 55first strand
Strand 2
A
80 83anti-parallel
Strand 3
A
74 77anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
108 112first strand
Strand 2
A
115 119anti-parallel
Strand 3
A
189 192anti-parallel
Strand 4
A
154 157anti-parallel
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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
195 202first strand
Strand 2
A
208 215anti-parallel
Strand 3
A
249 255parallel
Strand 4
A
268 272parallel
Strand 5
A
262 263anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
308 310first strand
Strand 2
A
414 416parallel
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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
516 521first strand
Strand 2
A
460 468anti-parallel
Strand 3
A
447 455anti-parallel
Strand 4
A
541 543parallel
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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
509 512first strand
Strand 2
A
483 490anti-parallel
Strand 3
A
529 532anti-parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
500 501first strand
Strand 2
A
504 505anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il