Analysis of interatomic Contacts of Structural Units in PDB entry:
2DX0


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2DX0 entry

There are 2 chains in PDB entry 2DX0 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
ASP 520PRO 636
B
SER 542PRO 638
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 6 helices in PDB entry 2DX0. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
522 526Right-handed 310
Helix 2
2
A
539 552Right-handed alpha
Helix 3
3
A
609 617Right-handed alpha
Helix 4
4
A
624 628Right-handed 310
Helix 5
5
B
542 553Right-handed alpha
Helix 6
6
B
609 617Right-handed alpha
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There are 2 sheets in PDB entry 2DX0. Click on sheet of interest to get list of strands forming it: A, B,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
561 565first strand
Strand 2
A
573 579anti-parallel
Strand 3
A
582 593anti-parallel
Strand 4
A
596 600anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
561 565first strand
Strand 2
B
573 579anti-parallel
Strand 3
B
582 593anti-parallel
Strand 4
B
596 600anti-parallel
Strand 5
B
606 607anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il