Analysis of interatomic Contacts of Structural Units in PDB entry:
2E2D


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2E2D entry

There are 2 chains in PDB entry 2E2D (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 TYR 104PRO 268
C
 CYS 1001GLY 1180
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 10 helices in PDB entry 2E2D. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
130 147Right-handed alpha
Helix 2
2
A
216 228Right-handed alpha
Helix 3
3
A
255 267Right-handed alpha
Helix 4
4
C
1007 1015Right-handed alpha
Helix 5
5
C
1068 1072Right-handed 310
Helix 6
6
C
1108 1110Right-handed 310
Helix 7
7
C
1111 1118Right-handed alpha
Helix 8
8
C
1120 1126Right-handed alpha
Helix 9
9
C
1149 1154Right-handed alpha
Helix 10
10
C
1159 1165Right-handed alpha
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There are 5 sheets in PDB entry 2E2D. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
152 155first strand
Strand 2
A
117 122parallel
Strand 3
A
163 168parallel
Strand 4
A
199 202parallel
Strand 5
A
184 188anti-parallel
Strand 6
C
1002 1003anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
207 208first strand
Strand 2
A
214 215parallel
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There are 7 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
1104 1106first strand
Strand 2
C
1083 1090anti-parallel
Strand 3
C
1095 1097anti-parallel
Strand 4
C
1062 1065parallel
Strand 5
C
1039 1054anti-parallel
Strand 6
C
1017 1033anti-parallel
Strand 7
C
1083 1090anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
1129 1132first strand
Strand 2
C
1145 1148parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
1166 1169first strand
Strand 2
C
1175 1178anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il