Analysis of interatomic Contacts of Structural Units in PDB entry:
2E33


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2E33 entry

There are 2 chains in PDB entry 2E33 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 123PRO 297
B
 LYS 1VAL 124
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 5 helices in PDB entry 2E33. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
194 201Right-handed alpha
Helix 2
2
B
5 13Right-handed alpha
Helix 3
3
B
24 33Right-handed alpha
Helix 4
4
B
50 56Right-handed alpha
Helix 5
5
B
57 60Right-handed 310
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There are 5 sheets in PDB entry 2E33. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
141 144first strand
Strand 2
A
180 187anti-parallel
Strand 3
A
267 276anti-parallel
Strand 4
A
219 228anti-parallel
Strand 5
A
234 239anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
141 144first strand
Strand 2
A
180 187anti-parallel
Strand 3
A
267 276anti-parallel
Strand 4
A
219 228anti-parallel
Strand 5
A
243 244anti-parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
151 154first strand
Strand 2
A
171 174anti-parallel
Strand 3
A
287 296anti-parallel
Strand 4
A
204 212anti-parallel
Strand 5
A
252 258anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
43 47first strand
Strand 2
B
79 86anti-parallel
Strand 3
B
97 104anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
62 63first strand
Strand 2
B
72 74anti-parallel
Strand 3
B
106 111anti-parallel
Strand 4
B
116 123anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il