Analysis of interatomic Contacts of Structural Units in PDB entry:
2E9D


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2E9D entry

There are 2 chains in PDB entry 2E9D (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 16GLU 240
B
 GLY 17PHE 243
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 21 helices in PDB entry 2E9D. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
27 35Right-handed alpha
Helix 2
2
A
38 59Right-handed alpha
Helix 3
3
A
79 93Right-handed alpha
Helix 4
4
A
95 102Right-handed alpha
Helix 5
5
A
117 132Right-handed alpha
Helix 6
6
A
146 165Right-handed alpha
Helix 7
7
A
168 172Right-handed 310
Helix 8
8
A
173 178Right-handed alpha
Helix 9
9
A
179 181Right-handed 310
Helix 10
10
A
206 210Right-handed 310
Helix 11
11
A
220 224Right-handed 310
Helix 12
12
A
225 240Right-handed alpha
Helix 13
13
B
27 35Right-handed alpha
Helix 14
14
B
38 60Right-handed alpha
Helix 15
15
B
83 103Right-handed alpha
Helix 16
16
B
117 132Right-handed alpha
Helix 17
17
B
146 164Right-handed alpha
Helix 18
18
B
168 172Right-handed 310
Helix 19
19
B
173 179Right-handed alpha
Helix 20
20
B
206 210Right-handed 310
Helix 21
21
B
225 243Right-handed alpha
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There are 2 sheets in PDB entry 2E9D. Click on sheet of interest to get list of strands forming it: A, B,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
106 108first strand
Strand 2
A
138 141parallel
Strand 3
A
64 69parallel
Strand 4
A
20 25parallel
Strand 5
A
191 194parallel
Strand 6
A
213 216parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
106 110first strand
Strand 2
B
138 142parallel
Strand 3
B
64 69parallel
Strand 4
B
20 25parallel
Strand 5
B
191 194parallel
Strand 6
B
213 216parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il