Analysis of interatomic Contacts of Structural Units in PDB entry:
2ETM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2ETM entry

There are 2 chains in PDB entry 2ETM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
TYR 415GLN 686
B
ARG 413GLU 689
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 2ETM. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
418 420Right-handed 310
Helix 2
2
A
461 476Right-handed alpha
Helix 3
3
A
506 514Right-handed alpha
Helix 4
4
A
515 518Right-handed 310
Helix 5
5
A
519 539Right-handed alpha
Helix 6
6
A
548 550Right-handed 310
Helix 7
7
A
567 571Right-handed 310
Helix 8
8
A
590 597Right-handed alpha
Helix 9
9
A
600 617Right-handed alpha
Helix 10
10
A
627 636Right-handed alpha
Helix 11
11
A
648 659Right-handed alpha
Helix 12
12
A
662 666Right-handed 310
Helix 13
13
A
668 685Right-handed alpha
Helix 14
14
B
418 420Right-handed 310
Helix 15
15
B
461 476Right-handed alpha
Helix 16
16
B
506 514Right-handed alpha
Helix 17
17
B
519 539Right-handed alpha
Helix 18
18
B
548 550Right-handed 310
Helix 19
19
B
590 597Right-handed alpha
Helix 20
20
B
600 617Right-handed alpha
Helix 21
21
B
627 636Right-handed alpha
Helix 22
22
B
648 659Right-handed alpha
Helix 23
23
B
662 666Right-handed 310
Helix 24
24
B
668 688Right-handed alpha
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There are 5 sheets in PDB entry 2ETM. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
422 430first strand
Strand 2
A
435 441anti-parallel
Strand 3
A
449 455anti-parallel
Strand 4
A
496 500anti-parallel
Strand 5
A
486 490anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
552 556first strand
Strand 2
A
559 562anti-parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
422 423first strand
Strand 2
B
440 441anti-parallel
Strand 3
B
449 455anti-parallel
Strand 4
B
435 437anti-parallel
Strand 5
B
427 430anti-parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
422 423first strand
Strand 2
B
440 441anti-parallel
Strand 3
B
449 455anti-parallel
Strand 4
B
496 500anti-parallel
Strand 5
B
486 490anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
552 556first strand
Strand 2
B
559 562anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il