Analysis of interatomic Contacts of Structural Units in PDB entry:
2F3M


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2F3M entry

There are 6 chains in PDB entry 2F3M (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 0LYS 217
B
 MET 0LYS 217
C
 PRO 1LYS 217
D
 MET 0LYS 217
E
 MET 0LYS 217
F
 MET 0LYS 217
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 56 helices in PDB entry 2F3M. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
10 12Right-handed 310
Helix 2
2
A
13 23Right-handed alpha
Helix 3
3
A
42 50Right-handed alpha
Helix 4
4
A
71 83Right-handed alpha
Helix 5
5
A
89 115Right-handed alpha
Helix 6
6
A
118 142Right-handed alpha
Helix 7
7
A
153 170Right-handed alpha
Helix 8
8
A
177 190Right-handed alpha
Helix 9
9
A
190 199Right-handed alpha
Helix 10
10
B
10 12Right-handed 310
Helix 11
11
B
13 24Right-handed alpha
Helix 12
12
B
42 47Right-handed alpha
Helix 13
13
B
71 83Right-handed alpha
Helix 14
14
B
89 115Right-handed alpha
Helix 15
15
B
118 142Right-handed alpha
Helix 16
16
B
153 170Right-handed alpha
Helix 17
17
B
177 190Right-handed alpha
Helix 18
18
B
190 199Right-handed alpha
Helix 19
19
C
10 12Right-handed 310
Helix 20
20
C
13 23Right-handed alpha
Helix 21
21
C
42 47Right-handed alpha
Helix 22
22
C
71 83Right-handed alpha
Helix 23
23
C
89 115Right-handed alpha
Helix 24
24
C
118 142Right-handed alpha
Helix 25
25
C
153 170Right-handed alpha
Helix 26
26
C
177 189Right-handed alpha
Helix 27
27
C
190 199Right-handed alpha
Helix 28
28
D
10 12Right-handed 310
Helix 29
29
D
13 23Right-handed alpha
Helix 30
30
D
42 47Right-handed alpha
Helix 31
31
D
71 83Right-handed alpha
Helix 32
32
D
89 115Right-handed alpha
Helix 33
33
D
118 142Right-handed alpha
Helix 34
34
D
153 170Right-handed alpha
Helix 35
35
D
171 175Right-handed 310
Helix 36
36
D
177 189Right-handed alpha
Helix 37
37
D
190 199Right-handed alpha
Helix 38
38
E
10 12Right-handed 310
Helix 39
39
E
13 23Right-handed alpha
Helix 40
40
E
42 47Right-handed alpha
Helix 41
41
E
71 83Right-handed alpha
Helix 42
42
E
89 115Right-handed alpha
Helix 43
43
E
118 142Right-handed alpha
Helix 44
44
E
153 170Right-handed alpha
Helix 45
45
E
171 174Right-handed 310
Helix 46
46
E
177 190Right-handed alpha
Helix 47
47
E
190 199Right-handed alpha
Helix 48
48
F
10 12Right-handed 310
Helix 49
49
F
13 23Right-handed alpha
Helix 50
50
F
42 47Right-handed alpha
Helix 51
51
F
71 83Right-handed alpha
Helix 52
52
F
89 115Right-handed alpha
Helix 53
53
F
118 142Right-handed alpha
Helix 54
54
F
153 170Right-handed alpha
Helix 55
55
F
177 190Right-handed alpha
Helix 56
56
F
190 199Right-handed alpha
Back to top of page

There are 6 sheets in PDB entry 2F3M. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
27 32first strand
Strand 2
A
2 7parallel
Strand 3
A
61 64anti-parallel
Strand 4
A
67 70anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
27 32first strand
Strand 2
B
2 7parallel
Strand 3
B
61 64anti-parallel
Strand 4
B
67 70anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
27 32first strand
Strand 2
C
2 7parallel
Strand 3
C
61 64anti-parallel
Strand 4
C
67 70anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
27 32first strand
Strand 2
D
2 7parallel
Strand 3
D
61 64anti-parallel
Strand 4
D
67 70anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
27 32first strand
Strand 2
E
2 7parallel
Strand 3
E
61 64anti-parallel
Strand 4
E
67 70anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
27 32first strand
Strand 2
F
2 7parallel
Strand 3
F
61 64anti-parallel
Strand 4
F
67 70anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il