Analysis of interatomic Contacts of Structural Units in PDB entry:
2F8J


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2F8J entry

There are 4 chains in PDB entry 2F8J (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 0PHE 334
B
 ASN 2PHE 334
C
 MET 1LYS 335
D
 ASN 2PHE 334
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 60 helices in PDB entry 2F8J. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
2 11Right-handed alpha
Helix 2
2
A
34 45Right-handed alpha
Helix 3
3
A
48 52Right-handed 310
Helix 4
4
A
58 70Right-handed alpha
Helix 5
5
A
75 77Right-handed 310
Helix 6
6
A
84 96Right-handed alpha
Helix 7
7
A
107 117Right-handed alpha
Helix 8
8
A
156 165Right-handed alpha
Helix 9
9
A
176 180Right-handed 310
Helix 10
10
A
184 190Right-handed 310
Helix 11
11
A
217 228Right-handed alpha
Helix 12
12
A
234 247Right-handed alpha
Helix 13
13
A
247 273Right-handed alpha
Helix 14
14
A
289 303Right-handed alpha
Helix 15
15
A
320 334Right-handed alpha
Helix 16
16
B
2 11Right-handed alpha
Helix 17
17
B
34 44Right-handed alpha
Helix 18
18
B
45 50Right-handed 310
Helix 19
19
B
58 70Right-handed alpha
Helix 20
20
B
75 77Right-handed 310
Helix 21
21
B
84 96Right-handed alpha
Helix 22
22
B
107 116Right-handed alpha
Helix 23
23
B
156 165Right-handed alpha
Helix 24
24
B
176 181Right-handed alpha
Helix 25
25
B
184 190Right-handed 310
Helix 26
26
B
217 228Right-handed alpha
Helix 27
27
B
234 246Right-handed alpha
Helix 28
28
B
247 273Right-handed alpha
Helix 29
29
B
289 303Right-handed alpha
Helix 30
30
B
320 334Right-handed alpha
Helix 31
31
C
3 11Right-handed alpha
Helix 32
32
C
34 45Right-handed alpha
Helix 33
33
C
48 52Right-handed 310
Helix 34
34
C
58 70Right-handed alpha
Helix 35
35
C
75 77Right-handed 310
Helix 36
36
C
84 96Right-handed alpha
Helix 37
37
C
107 117Right-handed alpha
Helix 38
38
C
156 165Right-handed alpha
Helix 39
39
C
176 180Right-handed 310
Helix 40
40
C
184 190Right-handed 310
Helix 41
41
C
217 228Right-handed alpha
Helix 42
42
C
234 247Right-handed alpha
Helix 43
43
C
247 272Right-handed alpha
Helix 44
44
C
289 303Right-handed alpha
Helix 45
45
C
320 335Right-handed alpha
Helix 46
46
D
2 11Right-handed alpha
Helix 47
47
D
34 45Right-handed alpha
Helix 48
48
D
48 52Right-handed 310
Helix 49
49
D
58 70Right-handed alpha
Helix 50
50
D
75 77Right-handed 310
Helix 51
51
D
83 96Right-handed alpha
Helix 52
52
D
107 116Right-handed alpha
Helix 53
53
D
156 166Right-handed alpha
Helix 54
54
D
176 181Right-handed alpha
Helix 55
55
D
184 190Right-handed 310
Helix 56
56
D
217 228Right-handed alpha
Helix 57
57
D
234 246Right-handed alpha
Helix 58
58
D
247 273Right-handed alpha
Helix 59
59
D
289 304Right-handed alpha
Helix 60
60
D
320 334Right-handed alpha
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There are 12 sheets in PDB entry 2F8J. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
22 23first strand
Strand 2
A
305 306parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
79 83first strand
Strand 2
A
211 216anti-parallel
Strand 3
A
194 199anti-parallel
Strand 4
A
169 173parallel
Strand 5
A
140 145parallel
Strand 6
A
98 101parallel
Strand 7
A
120 122parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
275 276first strand
Strand 2
A
283 287anti-parallel
Strand 3
A
313 317anti-parallel
Strand 4
A
308 310anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
22 23first strand
Strand 2
B
305 306parallel
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There are 7 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
79 83first strand
Strand 2
B
211 216anti-parallel
Strand 3
B
194 199anti-parallel
Strand 4
B
169 173parallel
Strand 5
B
140 145parallel
Strand 6
B
98 101parallel
Strand 7
B
120 122parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
283 287first strand
Strand 2
B
313 317anti-parallel
Strand 3
B
308 310anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
22 23first strand
Strand 2
C
305 306parallel
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There are 7 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
79 83first strand
Strand 2
C
211 216anti-parallel
Strand 3
C
194 199anti-parallel
Strand 4
C
169 173parallel
Strand 5
C
140 145parallel
Strand 6
C
98 101parallel
Strand 7
C
120 122parallel
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There are 3 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
283 287first strand
Strand 2
C
313 317anti-parallel
Strand 3
C
308 310anti-parallel
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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
22 23first strand
Strand 2
D
305 306parallel
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There are 7 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
79 82first strand
Strand 2
D
212 216anti-parallel
Strand 3
D
194 199anti-parallel
Strand 4
D
169 173parallel
Strand 5
D
140 145parallel
Strand 6
D
98 101parallel
Strand 7
D
120 122parallel
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There are 3 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
283 287first strand
Strand 2
D
313 317anti-parallel
Strand 3
D
308 309anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il