Analysis of interatomic Contacts of Structural Units in PDB entry:
2F8N


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2F8N entry

There are 10 chains in PDB entry 2F8N (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
I
 A 1 T 145
J
 A 146 T 290
A
 PRO 438ALA 535
B
 ASP 24GLY 102
D
 ARG 1230LYS 1322
E
 PRO 638ALA 735
F
 ARG 219GLY 302
H
 ARG 1430LYS 1522
G
 SER 1012LYS 1119
K
 ALA 14LYS 118
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 35 helices in PDB entry 2F8N. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
444 455Right-handed alpha
Helix 2
2
A
463 477Right-handed alpha
Helix 3
3
A
485 514Right-handed alpha
Helix 4
4
A
520 532Right-handed alpha
Helix 5
5
B
30 41Right-handed alpha
Helix 6
6
B
49 76Right-handed alpha
Helix 7
7
B
82 93Right-handed alpha
Helix 8
8
D
1234 1246Right-handed alpha
Helix 9
9
D
1252 1281Right-handed alpha
Helix 10
10
D
1287 1299Right-handed alpha
Helix 11
11
D
1300 1319Right-handed alpha
Helix 12
12
E
644 657Right-handed alpha
Helix 13
13
E
663 677Right-handed alpha
Helix 14
14
E
685 714Right-handed alpha
Helix 15
15
E
720 731Right-handed alpha
Helix 16
16
F
225 229Right-handed 310
Helix 17
17
F
230 241Right-handed alpha
Helix 18
18
F
249 276Right-handed alpha
Helix 19
19
F
282 293Right-handed alpha
Helix 20
20
H
1434 1444Right-handed alpha
Helix 21
21
H
1452 1481Right-handed alpha
Helix 22
22
H
1487 1499Right-handed alpha
Helix 23
23
H
1500 1520Right-handed alpha
Helix 24
24
G
1016 1022Right-handed alpha
Helix 25
25
G
1026 1038Right-handed alpha
Helix 26
26
G
1045 1073Right-handed alpha
Helix 27
27
G
1079 1089Right-handed alpha
Helix 28
28
G
1090 1097Right-handed alpha
Helix 29
29
G
1112 1116Right-handed 310
Helix 30
30
K
16 22Right-handed alpha
Helix 31
31
K
26 37Right-handed alpha
Helix 32
32
K
46 73Right-handed alpha
Helix 33
33
K
79 90Right-handed alpha
Helix 34
34
K
90 97Right-handed alpha
Helix 35
35
K
112 116Right-handed 310
Back to top of page

There are 10 sheets in PDB entry 2F8N. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
483 484first strand
Strand 2
B
80 81parallel
Back to list of sheets
Back to top of page

There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
518 519first strand
Strand 2
B
45 46parallel
Back to list of sheets
Back to top of page

There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
96 98first strand
Strand 2
G
1100 1102parallel
Back to list of sheets
Back to top of page

There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
1250 1251first strand
Strand 2
K
77 78parallel
Back to list of sheets
Back to top of page

There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
1285 1286first strand
Strand 2
K
42 43parallel
Back to list of sheets
Back to top of page

There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
683 684first strand
Strand 2
F
280 281parallel
Back to list of sheets
Back to top of page

There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
718 719first strand
Strand 2
F
245 246parallel
Back to list of sheets
Back to top of page

There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
296 298first strand
Strand 2
K
100 102parallel
Back to list of sheets
Back to top of page

There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
1450 1451first strand
Strand 2
G
1077 1078parallel
Back to list of sheets
Back to top of page

There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
1485 1486first strand
Strand 2
G
1042 1043parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il