Analysis of interatomic Contacts of Structural Units in PDB entry:
2FIM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2FIM entry

There are 2 chains in PDB entry 2FIM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 238ASP 483
B
 PRO 238ASP 483
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 10 helices in PDB entry 2FIM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
240 244Right-handed 310
Helix 2
2
A
334 338Right-handed 310
Helix 3
3
A
342 346Right-handed 310
Helix 4
4
A
392 400Right-handed alpha
Helix 5
5
A
470 481Right-handed alpha
Helix 6
6
B
238 244Right-handed alpha
Helix 7
7
B
334 338Right-handed 310
Helix 8
8
B
342 346Right-handed 310
Helix 9
9
B
392 399Right-handed alpha
Helix 10
10
B
470 481Right-handed alpha
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There are 4 sheets in PDB entry 2FIM. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 13 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
252 259first strand
Strand 2
A
270 275anti-parallel
Strand 3
A
281 288anti-parallel
Strand 4
A
296 300anti-parallel
Strand 5
A
313 319anti-parallel
Strand 6
A
325 329anti-parallel
Strand 7
A
349 355anti-parallel
Strand 8
A
368 373anti-parallel
Strand 9
A
405 410anti-parallel
Strand 10
A
438 441anti-parallel
Strand 11
A
451 457anti-parallel
Strand 12
A
460 465anti-parallel
Strand 13
A
252 259anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
414 416first strand
Strand 2
A
421 423anti-parallel
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There are 13 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
252 259first strand
Strand 2
B
270 275anti-parallel
Strand 3
B
282 288anti-parallel
Strand 4
B
296 300anti-parallel
Strand 5
B
315 319anti-parallel
Strand 6
B
325 330anti-parallel
Strand 7
B
349 357anti-parallel
Strand 8
B
366 373anti-parallel
Strand 9
B
405 410anti-parallel
Strand 10
B
438 441anti-parallel
Strand 11
B
451 457anti-parallel
Strand 12
B
460 465anti-parallel
Strand 13
B
252 259anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
414 415first strand
Strand 2
B
422 423anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il