Analysis of interatomic Contacts of Structural Units in PDB entry:
2FMT


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2FMT entry

There are 12 chains in PDB entry 2FMT (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
C
 C 1 G 7
C
 G 9 G 19
C
 A 21 G 31
C
 U 33 G 53
C
 C 56 A 76
D
 C 1 G 7
D
 G 9 G 19
D
 A 21 G 31
D
 U 33 G 53
D
 C 56 A 76
A
 SER 1VAL 314
B
 SER 1VAL 314
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 21 helices in PDB entry 2FMT. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
13 24Right-handed alpha
Helix 2
2
A
50 58Right-handed alpha
Helix 3
3
A
71 80Right-handed alpha
Helix 4
4
A
96 101Right-handed alpha
Helix 5
5
A
122 128Right-handed alpha
Helix 6
6
A
164 188Right-handed alpha
Helix 7
7
A
198 200Right-handed 310
Helix 8
8
A
209 212Right-handed alpha
Helix 9
9
A
220 229Right-handed alpha
Helix 10
10
A
296 307Right-handed alpha
Helix 11
11
B
13 24Right-handed alpha
Helix 12
12
B
50 58Right-handed alpha
Helix 13
13
B
71 80Right-handed alpha
Helix 14
14
B
96 101Right-handed alpha
Helix 15
15
B
122 128Right-handed alpha
Helix 16
16
B
164 188Right-handed alpha
Helix 17
17
B
198 200Right-handed 310
Helix 18
18
B
209 212Right-handed alpha
Helix 19
19
B
220 229Right-handed alpha
Helix 20
20
B
296 300Right-handed alpha
Helix 21
21
B
304 307Right-handed 310
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There are 6 sheets in PDB entry 2FMT. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
150 157first strand
Strand 2
A
133 140anti-parallel
Strand 3
A
106 110anti-parallel
Strand 4
A
84 88parallel
Strand 5
A
5 10parallel
Strand 6
A
28 33parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
237 239first strand
Strand 2
A
244 249anti-parallel
Strand 3
A
285 288anti-parallel
Strand 4
A
293 295anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
250 253first strand
Strand 2
A
280 283anti-parallel
Strand 3
A
272 275anti-parallel
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There are 6 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
150 157first strand
Strand 2
B
133 140anti-parallel
Strand 3
B
106 110anti-parallel
Strand 4
B
84 88parallel
Strand 5
B
5 10parallel
Strand 6
B
28 33parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
237 239first strand
Strand 2
B
244 249anti-parallel
Strand 3
B
285 288anti-parallel
Strand 4
B
293 295anti-parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
250 253first strand
Strand 2
B
280 283anti-parallel
Strand 3
B
272 275anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il