Analysis of interatomic Contacts of Structural Units in PDB entry:
2FMY

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 2FMY entry

There are 4 chains in PDB entry 2FMY (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 2	SER 219
B	ALA 1002	SER 1219
C	ALA 2002	SER 2219
D	ALA 3002	SER 3219

There are 35 helices in PDB entry 2FMY. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	11	16	Right-handed alpha
Helix 2	2	A	17	22	Right-handed 310
Helix 3	3	A	24	28	Right-handed 310
Helix 4	4	A	100	110	Right-handed alpha
Helix 5	5	A	111	137	Right-handed alpha
Helix 6	6	A	137	156	Right-handed alpha
Helix 7	7	A	170	179	Right-handed alpha
Helix 8	8	A	181	195	Right-handed alpha
Helix 9	9	A	210	218	Right-handed alpha
Helix 10	10	B	1011	1017	Right-handed alpha
Helix 11	11	B	1018	1022	Right-handed 310
Helix 12	12	B	1024	1028	Right-handed 310
Helix 13	13	B	1100	1110	Right-handed alpha
Helix 14	14	B	1111	1137	Right-handed alpha
Helix 15	15	B	1137	1156	Right-handed alpha
Helix 16	16	B	1170	1179	Right-handed alpha
Helix 17	17	B	1181	1195	Right-handed alpha
Helix 18	18	B	1210	1218	Right-handed alpha
Helix 19	19	C	2011	2016	Right-handed alpha
Helix 20	20	C	2017	2022	Right-handed 310
Helix 21	21	C	2024	2028	Right-handed 310
Helix 22	22	C	2100	2110	Right-handed alpha
Helix 23	23	C	2110	2137	Right-handed alpha
Helix 24	24	C	2137	2156	Right-handed alpha
Helix 25	25	C	2170	2178	Right-handed alpha
Helix 26	26	C	2181	2195	Right-handed alpha
Helix 27	27	C	2210	2217	Right-handed alpha
Helix 28	28	D	3011	3017	Right-handed alpha
Helix 29	29	D	3021	3026	Right-handed alpha
Helix 30	30	D	3100	3110	Right-handed alpha
Helix 31	31	D	3110	3137	Right-handed alpha
Helix 32	32	D	3137	3156	Right-handed alpha
Helix 33	33	D	3170	3179	Right-handed alpha
Helix 34	34	D	3181	3195	Right-handed alpha
Helix 35	35	D	3210	3215	Right-handed alpha

There are 12 sheets in PDB entry 2FMY. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	29	33	first strand
Strand 2	A	93	99	anti-parallel
Strand 3	A	48	54	anti-parallel
Strand 4	A	78	80	anti-parallel

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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	38	40	first strand
Strand 2	A	86	89	anti-parallel
Strand 3	A	56	62	anti-parallel
Strand 4	A	67	74	anti-parallel

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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	157	159	first strand
Strand 2	A	162	166	anti-parallel
Strand 3	A	205	208	anti-parallel
Strand 4	A	198	200	anti-parallel

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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1029	1033	first strand
Strand 2	B	1093	1099	anti-parallel
Strand 3	B	1048	1054	anti-parallel
Strand 4	B	1078	1080	anti-parallel

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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1038	1040	first strand
Strand 2	B	1086	1089	anti-parallel
Strand 3	B	1057	1062	anti-parallel
Strand 4	B	1067	1073	anti-parallel

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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1157	1159	first strand
Strand 2	B	1162	1166	anti-parallel
Strand 3	B	1205	1208	anti-parallel
Strand 4	B	1198	1202	anti-parallel

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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	2029	2033	first strand
Strand 2	C	2093	2099	anti-parallel
Strand 3	C	2048	2054	anti-parallel
Strand 4	C	2078	2080	anti-parallel

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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	2038	2040	first strand
Strand 2	C	2086	2089	anti-parallel
Strand 3	C	2057	2062	anti-parallel
Strand 4	C	2067	2073	anti-parallel

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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	2157	2159	first strand
Strand 2	C	2162	2166	anti-parallel
Strand 3	C	2205	2208	anti-parallel
Strand 4	C	2198	2200	anti-parallel

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There are 4 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	3029	3033	first strand
Strand 2	D	3093	3099	anti-parallel
Strand 3	D	3048	3054	anti-parallel
Strand 4	D	3078	3080	anti-parallel

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There are 4 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	3038	3040	first strand
Strand 2	D	3086	3089	anti-parallel
Strand 3	D	3057	3062	anti-parallel
Strand 4	D	3067	3073	anti-parallel

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There are 4 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	3157	3159	first strand
Strand 2	D	3162	3166	anti-parallel
Strand 3	D	3205	3208	anti-parallel
Strand 4	D	3198	3202	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 2FMY

Analysis of interatomic Contacts of Structural Units in PDB entry:
2FMY