Analysis of interatomic Contacts of Structural Units in PDB entry:
2FO1


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2FO1 entry

There are 5 chains in PDB entry 2FO1 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
T 1 A 15
C
A 1 T 15
A
VAL 195ARG 663
D
GLU 52GLN 114
E
ARG 933ARG 1297
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 2FO1. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
199 209Right-handed alpha
Helix 2
2
A
210 213Right-handed 310
Helix 3
3
A
247 261Right-handed alpha
Helix 4
4
A
262 264Right-handed 310
Helix 5
5
A
482 486Right-handed 310
Helix 6
6
A
531 535Right-handed 310
Helix 7
7
A
615 619Right-handed 310
Helix 8
8
A
624 629Right-handed alpha
Helix 9
9
D
59 84Right-handed alpha
Helix 10
10
D
84 99Right-handed alpha
Helix 11
11
D
99 113Right-handed alpha
Helix 12
12
E
1024 1032Right-handed alpha
Helix 13
13
E
1055 1062Right-handed alpha
Helix 14
14
E
1071 1083Right-handed alpha
Helix 15
15
E
1096 1105Right-handed alpha
Helix 16
16
E
1106 1116Right-handed alpha
Helix 17
17
E
1129 1137Right-handed alpha
Helix 18
18
E
1139 1147Right-handed alpha
Helix 19
19
E
1149 1155Right-handed alpha
Helix 20
20
E
1165 1173Right-handed alpha
Helix 21
21
E
1177 1189Right-handed alpha
Helix 22
22
E
1196 1200Right-handed 310
Helix 23
23
E
1210 1216Right-handed alpha
Helix 24
24
E
1219 1230Right-handed alpha
Helix 25
25
E
1243 1252Right-handed alpha
Helix 26
26
E
1253 1263Right-handed alpha
Helix 27
27
E
1276 1284Right-handed alpha
Helix 28
28
E
1286 1295Right-handed alpha
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There are 6 sheets in PDB entry 2FO1. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 16 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
321 326first strand
Strand 2
A
241 245anti-parallel
Strand 3
A
215 222anti-parallel
Strand 4
A
536 550anti-parallel
Strand 5
A
391 398anti-parallel
Strand 6
A
401 407anti-parallel
Strand 7
A
391 398anti-parallel
Strand 8
A
425 430anti-parallel
Strand 9
A
441 445anti-parallel
Strand 10
E
938 941anti-parallel
Strand 11
A
441 445anti-parallel
Strand 12
A
425 430anti-parallel
Strand 13
A
454 459anti-parallel
Strand 14
A
469 473anti-parallel
Strand 15
A
494 499anti-parallel
Strand 16
A
536 550anti-parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
494 499first strand
Strand 2
A
536 550anti-parallel
Strand 3
A
648 656anti-parallel
Strand 4
A
638 644anti-parallel
Strand 5
A
590 594anti-parallel
Strand 6
A
597 598anti-parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
224 226first strand
Strand 2
A
353 366parallel
Strand 3
A
340 349anti-parallel
Strand 4
A
286 291anti-parallel
Strand 5
A
301 302anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
410 411first strand
Strand 2
A
414 415anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
509 510first strand
Strand 2
A
515 516anti-parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
564 570first strand
Strand 2
A
579 584anti-parallel
Strand 3
A
608 611anti-parallel
Strand 4
A
602 605anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il