Analysis of interatomic Contacts of Structural Units in PDB entry:
2G8G


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2G8G entry

There is 1 chain in PDB entry 2G8G (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 211LEU 734
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 8 helices in PDB entry 2G8G. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
245 250Right-handed 310
Helix 2
2
A
277 281Right-handed 310
Helix 3
3
A
283 293Right-handed alpha
Helix 4
4
A
388 392Right-handed 310
Helix 5
5
A
486 490Right-handed 310
Helix 6
6
A
500 505Right-handed alpha
Helix 7
7
A
552 554Right-handed 310
Helix 8
8
A
561 567Right-handed 310
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There are 13 sheets in PDB entry 2G8G. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
321 325first strand
Strand 2
A
294 316anti-parallel
Strand 3
A
670 687anti-parallel
Strand 4
A
232 243anti-parallel
Strand 5
A
361 362parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
321 325first strand
Strand 2
A
294 316anti-parallel
Strand 3
A
403 408anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
252 256first strand
Strand 2
A
263 273anti-parallel
Strand 3
A
365 369anti-parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
252 256first strand
Strand 2
A
263 273anti-parallel
Strand 3
A
644 649anti-parallel
Strand 4
A
331 336anti-parallel
Strand 5
A
395 397anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
418 420first strand
Strand 2
A
730 732parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
438 441first strand
Strand 2
A
456 458anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
473 474first strand
Strand 2
A
603 604parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
477 478first strand
Strand 2
A
596 597anti-parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
483 484first strand
Strand 2
A
532 533anti-parallel
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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
507 510first strand
Strand 2
A
513 516anti-parallel
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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
539 541first strand
Strand 2
A
556 558anti-parallel
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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
576 579first strand
Strand 2
A
591 594anti-parallel
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There are 2 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
617 619first strand
Strand 2
A
636 638parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il