Analysis of interatomic Contacts of Structural Units in PDB entry:
2GB0


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2GB0 entry

There are 2 chains in PDB entry 2GB0 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 1THR 387
B
 SER 1ILE 389
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 33 helices in PDB entry 2GB0. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
12 25Right-handed alpha
Helix 2
2
A
60 79Right-handed alpha
Helix 3
3
A
98 111Right-handed alpha
Helix 4
4
A
120 127Right-handed alpha
Helix 5
5
A
149 163Right-handed alpha
Helix 6
6
A
201 203Right-handed 310
Helix 7
7
A
204 209Right-handed alpha
Helix 8
8
A
210 212Right-handed 310
Helix 9
9
A
231 236Right-handed alpha
Helix 10
10
A
237 240Right-handed 310
Helix 11
11
A
288 302Right-handed alpha
Helix 12
12
A
303 306Right-handed 310
Helix 13
13
A
346 348Right-handed 310
Helix 14
14
A
349 364Right-handed alpha
Helix 15
15
A
370 374Right-handed 310
Helix 16
16
A
377 381Right-handed 310
Helix 17
17
B
12 25Right-handed alpha
Helix 18
18
B
58 60Right-handed 310
Helix 19
19
B
61 79Right-handed alpha
Helix 20
20
B
98 111Right-handed alpha
Helix 21
21
B
120 127Right-handed alpha
Helix 22
22
B
148 163Right-handed alpha
Helix 23
23
B
201 203Right-handed 310
Helix 24
24
B
204 209Right-handed alpha
Helix 25
25
B
210 212Right-handed 310
Helix 26
26
B
231 236Right-handed alpha
Helix 27
27
B
237 240Right-handed 310
Helix 28
28
B
288 302Right-handed alpha
Helix 29
29
B
303 306Right-handed 310
Helix 30
30
B
346 348Right-handed 310
Helix 31
31
B
349 364Right-handed alpha
Helix 32
32
B
370 374Right-handed 310
Helix 33
33
B
377 381Right-handed 310
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There are 12 sheets in PDB entry 2GB0. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
166 168first strand
Strand 2
A
29 32parallel
Strand 3
A
3 9parallel
Strand 4
A
190 199parallel
Strand 5
A
182 187anti-parallel
Strand 6
A
173 179anti-parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
166 168first strand
Strand 2
A
29 32parallel
Strand 3
A
3 9parallel
Strand 4
A
190 199parallel
Strand 5
A
333 340parallel
Strand 6
A
326 330anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
48 51first strand
Strand 2
A
145 148anti-parallel
Strand 3
A
84 85anti-parallel
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There are 8 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
116 119first strand
Strand 2
A
136 141anti-parallel
Strand 3
A
89 94anti-parallel
Strand 4
A
243 248parallel
Strand 5
A
251 256anti-parallel
Strand 6
A
264 268anti-parallel
Strand 7
A
219 228anti-parallel
Strand 8
A
273 274anti-parallel
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There are 8 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
116 119first strand
Strand 2
A
136 141anti-parallel
Strand 3
A
89 94anti-parallel
Strand 4
A
243 248parallel
Strand 5
A
251 256anti-parallel
Strand 6
A
264 268anti-parallel
Strand 7
A
219 228anti-parallel
Strand 8
A
309 319anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
214 215first strand
Strand 2
A
383 384anti-parallel
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There are 6 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
166 168first strand
Strand 2
B
29 32parallel
Strand 3
B
2 9parallel
Strand 4
B
190 199parallel
Strand 5
B
182 187anti-parallel
Strand 6
B
176 179anti-parallel
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There are 6 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
166 168first strand
Strand 2
B
29 32parallel
Strand 3
B
2 9parallel
Strand 4
B
190 199parallel
Strand 5
B
333 340parallel
Strand 6
B
326 330anti-parallel
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There are 3 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
49 51first strand
Strand 2
B
145 147anti-parallel
Strand 3
B
84 85anti-parallel
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There are 8 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
116 119first strand
Strand 2
B
136 141anti-parallel
Strand 3
B
89 94anti-parallel
Strand 4
B
243 248parallel
Strand 5
B
251 256anti-parallel
Strand 6
B
264 268anti-parallel
Strand 7
B
219 228anti-parallel
Strand 8
B
273 274anti-parallel
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There are 8 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
116 119first strand
Strand 2
B
136 141anti-parallel
Strand 3
B
89 94anti-parallel
Strand 4
B
243 248parallel
Strand 5
B
251 256anti-parallel
Strand 6
B
264 268anti-parallel
Strand 7
B
219 228anti-parallel
Strand 8
B
309 319anti-parallel
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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
214 215first strand
Strand 2
B
383 384anti-parallel
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