Analysis of interatomic Contacts of Structural Units in PDB entry:
2GC5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2GC5 entry

There are 2 chains in PDB entry 2GC5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
MET 1HIS 184
A
ALA 186GLY 425
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 2GC5. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
2 12Right-handed alpha
Helix 2
2
A
22 32Right-handed alpha
Helix 3
3
A
33 38Right-handed 310
Helix 4
4
A
49 64Right-handed alpha
Helix 5
5
A
78 81Right-handed 310
Helix 6
6
A
91 113Right-handed alpha
Helix 7
7
A
119 135Right-handed alpha
Helix 8
8
A
167 169Right-handed 310
Helix 9
9
A
170 175Right-handed alpha
Helix 10
10
A
177 186Right-handed alpha
Helix 11
11
A
187 189Right-handed 310
Helix 12
12
A
201 216Right-handed alpha
Helix 13
13
A
258 279Right-handed alpha
Helix 14
14
A
284 294Right-handed alpha
Helix 15
15
A
321 332Right-handed alpha
Helix 16
16
A
349 359Right-handed alpha
Helix 17
17
A
390 402Right-handed alpha
Helix 18
18
A
412 424Right-handed alpha
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There are 3 sheets in PDB entry 2GC5. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
88 89first strand
Strand 2
A
83 85anti-parallel
Strand 3
A
68 71anti-parallel
Strand 4
A
139 143parallel
Strand 5
A
41 45parallel
Strand 6
A
160 163parallel
Strand 7
A
195 197parallel
Strand 8
A
219 221parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
227 233first strand
Strand 2
A
238 244anti-parallel
Strand 3
A
247 254anti-parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
302 305first strand
Strand 2
A
310 312anti-parallel
Strand 3
A
407 410parallel
Strand 4
A
337 340parallel
Strand 5
A
361 364parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il