Analysis of interatomic Contacts of Structural Units in PDB entry:
2GD4

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 2GD4 entry

There are 6 chains in PDB entry 2GD4 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
L	ARG 86	ARG 139
H	ILE 16	THR 244
I	VAL 5	VAL 431
A	LYS 87	GLU 138
B	ILE 16	LYS 249
C	PRO 4	VAL 431

There are 34 helices in PDB entry 2GD4. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	L	91	96	Right-handed 310
Helix 2	2	H	124	131	Right-handed alpha
Helix 3	3	H	164	172	Right-handed alpha
Helix 4	4	H	234	242	Right-handed alpha
Helix 5	5	I	6	10	Right-handed 310
Helix 6	6	I	47	70	Right-handed alpha
Helix 7	7	I	79	87	Right-handed alpha
Helix 8	8	I	87	92	Right-handed alpha
Helix 9	9	I	95	105	Right-handed alpha
Helix 10	10	I	114	138	Right-handed alpha
Helix 11	11	I	155	167	Right-handed alpha
Helix 12	12	I	178	192	Right-handed alpha
Helix 13	13	I	230	234	Right-handed 310
Helix 14	14	I	291	298	Right-handed alpha
Helix 15	15	I	300	310	Right-handed alpha
Helix 16	16	I	331	338	Right-handed alpha
Helix 17	17	I	341	349	Right-handed 310
Helix 18	18	A	91	96	Right-handed 310
Helix 19	19	B	124	131	Right-handed alpha
Helix 20	20	B	164	172	Right-handed alpha
Helix 21	21	B	234	242	Right-handed alpha
Helix 22	22	C	6	10	Right-handed 310
Helix 23	23	C	47	70	Right-handed alpha
Helix 24	24	C	79	87	Right-handed alpha
Helix 25	25	C	87	92	Right-handed alpha
Helix 26	26	C	95	105	Right-handed alpha
Helix 27	27	C	114	138	Right-handed alpha
Helix 28	28	C	155	167	Right-handed alpha
Helix 29	29	C	178	192	Right-handed alpha
Helix 30	30	C	230	234	Right-handed 310
Helix 31	31	C	291	298	Right-handed alpha
Helix 32	32	C	300	310	Right-handed alpha
Helix 33	33	C	331	338	Right-handed alpha
Helix 34	34	C	341	349	Right-handed 310

There are 18 sheets in PDB entry 2GD4. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	99	100	first strand
Strand 2	L	109	110	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	115	117	first strand
Strand 2	L	124	126	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	40	45	first strand
Strand 2	H	30	35	anti-parallel
Strand 3	H	64	68	anti-parallel
Strand 4	H	81	83	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	51	54	first strand
Strand 2	H	104	108	anti-parallel
Strand 3	H	85	90	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	135	140	first strand
Strand 2	H	156	163	anti-parallel
Strand 3	H	182	183	anti-parallel
Strand 4	H	226	230	anti-parallel
Strand 5	H	207	213	anti-parallel
Strand 6	H	198	202	anti-parallel
Strand 7	H	135	140	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	76	78	first strand
Strand 2	I	420	426	anti-parallel
Strand 3	I	408	414	anti-parallel
Strand 4	I	279	285	anti-parallel
Strand 5	I	268	273	anti-parallel
Strand 6	I	248	262	anti-parallel
Strand 7	I	235	238	anti-parallel

Back to list of sheets
Back to top of page

There are 8 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	76	78	first strand
Strand 2	I	420	426	anti-parallel
Strand 3	I	408	414	anti-parallel
Strand 4	I	279	285	anti-parallel
Strand 5	I	268	273	anti-parallel
Strand 6	I	248	262	anti-parallel
Strand 7	I	312	321	anti-parallel
Strand 8	I	400	403	parallel

Back to list of sheets
Back to top of page

There are 4 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	139	142	first strand
Strand 2	I	213	222	anti-parallel
Strand 3	I	145	149	anti-parallel
Strand 4	I	171	173	parallel

Back to list of sheets
Back to top of page

There are 4 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	139	142	first strand
Strand 2	I	213	222	anti-parallel
Strand 3	I	366	375	parallel
Strand 4	I	323	330	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	99	100	first strand
Strand 2	A	109	110	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	115	117	first strand
Strand 2	A	124	126	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	40	45	first strand
Strand 2	B	30	35	anti-parallel
Strand 3	B	64	68	anti-parallel
Strand 4	B	81	83	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	51	54	first strand
Strand 2	B	104	108	anti-parallel
Strand 3	B	85	90	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	135	140	first strand
Strand 2	B	156	163	anti-parallel
Strand 3	B	182	183	anti-parallel
Strand 4	B	226	230	anti-parallel
Strand 5	B	207	213	anti-parallel
Strand 6	B	198	202	anti-parallel
Strand 7	B	135	140	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	76	78	first strand
Strand 2	C	420	426	anti-parallel
Strand 3	C	408	414	anti-parallel
Strand 4	C	279	285	anti-parallel
Strand 5	C	268	273	anti-parallel
Strand 6	C	248	262	anti-parallel
Strand 7	C	235	238	anti-parallel

Back to list of sheets
Back to top of page

There are 8 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	76	78	first strand
Strand 2	C	420	426	anti-parallel
Strand 3	C	408	414	anti-parallel
Strand 4	C	279	285	anti-parallel
Strand 5	C	268	273	anti-parallel
Strand 6	C	248	262	anti-parallel
Strand 7	C	312	321	anti-parallel
Strand 8	C	400	403	parallel

Back to list of sheets
Back to top of page

There are 4 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	139	142	first strand
Strand 2	C	213	222	anti-parallel
Strand 3	C	145	149	anti-parallel
Strand 4	C	171	173	parallel

Back to list of sheets
Back to top of page

There are 4 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	139	142	first strand
Strand 2	C	213	222	anti-parallel
Strand 3	C	366	375	parallel
Strand 4	C	323	330	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 2GD4

Analysis of interatomic Contacts of Structural Units in PDB entry:
2GD4