Analysis of interatomic Contacts of Structural Units in PDB entry:
2GD9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2GD9 entry

There are 2 chains in PDB entry 2GD9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 0TRP 186
B
 GLY 0ASN 187
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 11 helices in PDB entry 2GD9. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
39 46Right-handed alpha
Helix 2
2
A
54 61Right-handed alpha
Helix 3
3
A
75 83Right-handed alpha
Helix 4
4
A
102 116Right-handed alpha
Helix 5
5
A
126 136Right-handed alpha
Helix 6
6
B
35 38Right-handed 310
Helix 7
7
B
39 46Right-handed alpha
Helix 8
8
B
54 61Right-handed alpha
Helix 9
9
B
73 82Right-handed alpha
Helix 10
10
B
102 115Right-handed alpha
Helix 11
11
B
126 136Right-handed alpha
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There are 7 sheets in PDB entry 2GD9. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
84 88first strand
Strand 2
A
47 53parallel
Strand 3
A
120 125parallel
Strand 4
A
10 16parallel
Strand 5
A
141 146parallel
Strand 6
A
180 185anti-parallel
Strand 7
A
168 174anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
21 23first strand
Strand 2
A
155 156anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
91 93first strand
Strand 2
A
98 100anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
149 150first strand
Strand 2
B
165 166anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
165 166first strand
Strand 2
B
149 150anti-parallel
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There are 7 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
84 88first strand
Strand 2
B
47 53parallel
Strand 3
B
120 125parallel
Strand 4
B
10 17parallel
Strand 5
B
141 147parallel
Strand 6
B
180 185anti-parallel
Strand 7
B
168 174anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
21 23first strand
Strand 2
B
155 156anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il