Analysis of interatomic Contacts of Structural Units in PDB entry:
2GDS


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2GDS entry

There are 4 chains in PDB entry 2GDS (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 1LYS 198
B
 LYS 1LYS 198
C
 LYS 1LYS 198
D
 LYS 1LYS 198
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 47 helices in PDB entry 2GDS. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
19 29Right-handed alpha
Helix 2
2
A
29 50Right-handed alpha
Helix 3
3
A
53 60Right-handed alpha
Helix 4
4
A
60 81Right-handed alpha
Helix 5
5
A
91 102Right-handed alpha
Helix 6
6
A
103 117Right-handed alpha
Helix 7
7
A
145 151Right-handed alpha
Helix 8
8
A
161 164Right-handed 310
Helix 9
9
A
165 170Right-handed alpha
Helix 10
10
A
172 181Right-handed alpha
Helix 11
11
A
182 184Right-handed 310
Helix 12
12
A
185 198Right-handed alpha
Helix 13
13
B
19 29Right-handed alpha
Helix 14
14
B
29 52Right-handed alpha
Helix 15
15
B
53 60Right-handed alpha
Helix 16
16
B
60 81Right-handed alpha
Helix 17
17
B
91 102Right-handed alpha
Helix 18
18
B
103 118Right-handed alpha
Helix 19
19
B
145 151Right-handed alpha
Helix 20
20
B
161 164Right-handed 310
Helix 21
21
B
165 170Right-handed alpha
Helix 22
22
B
172 181Right-handed alpha
Helix 23
23
B
185 198Right-handed alpha
Helix 24
24
C
19 29Right-handed alpha
Helix 25
25
C
29 52Right-handed alpha
Helix 26
26
C
53 80Right-handed alpha
Helix 27
27
C
91 102Right-handed alpha
Helix 28
28
C
103 118Right-handed alpha
Helix 29
29
C
145 150Right-handed alpha
Helix 30
30
C
161 164Right-handed 310
Helix 31
31
C
165 170Right-handed alpha
Helix 32
32
C
172 181Right-handed alpha
Helix 33
33
C
182 184Right-handed 310
Helix 34
34
C
185 195Right-handed alpha
Helix 35
35
D
10 15Right-handed 310
Helix 36
36
D
19 29Right-handed alpha
Helix 37
37
D
29 52Right-handed alpha
Helix 38
38
D
53 60Right-handed alpha
Helix 39
39
D
60 81Right-handed alpha
Helix 40
40
D
91 102Right-handed alpha
Helix 41
41
D
103 118Right-handed alpha
Helix 42
42
D
145 151Right-handed alpha
Helix 43
43
D
161 164Right-handed 310
Helix 44
44
D
165 170Right-handed alpha
Helix 45
45
D
172 181Right-handed alpha
Helix 46
46
D
182 184Right-handed 310
Helix 47
47
D
185 195Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 2GDS. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
134 141first strand
Strand 2
A
122 129anti-parallel
Strand 3
A
153 159anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
134 141first strand
Strand 2
B
122 129anti-parallel
Strand 3
B
153 159anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
134 141first strand
Strand 2
C
122 129anti-parallel
Strand 3
C
153 159anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
134 141first strand
Strand 2
D
122 129anti-parallel
Strand 3
D
153 159anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il