Analysis of interatomic Contacts of Structural Units in PDB entry:
2GEK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2GEK entry

There is 1 chain in PDB entry 2GEK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1SER 373
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 2GEK. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
15 31Right-handed alpha
Helix 2
2
A
72 87Right-handed alpha
Helix 3
3
A
100 108Right-handed alpha
Helix 4
4
A
123 132Right-handed alpha
Helix 5
5
A
134 139Right-handed alpha
Helix 6
6
A
148 160Right-handed alpha
Helix 7
7
A
171 177Right-handed alpha
Helix 8
8
A
199 202Right-handed 310
Helix 9
9
A
203 216Right-handed alpha
Helix 10
10
A
230 238Right-handed alpha
Helix 11
11
A
239 243Right-handed 310
Helix 12
12
A
252 263Right-handed alpha
Helix 13
13
A
277 287Right-handed alpha
Helix 14
14
A
295 303Right-handed alpha
Helix 15
15
A
315 329Right-handed alpha
Helix 16
16
A
329 344Right-handed alpha
Helix 17
17
A
345 347Right-handed 310
Helix 18
18
A
348 364Right-handed alpha
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There are 3 sheets in PDB entry 2GEK. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
51 53first strand
Strand 2
A
34 39parallel
Strand 3
A
2 6parallel
Strand 4
A
90 94parallel
Strand 5
A
113 117parallel
Strand 6
A
143 146parallel
Strand 7
A
163 165parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
109 110first strand
Strand 2
A
371 372anti-parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
245 247first strand
Strand 2
A
222 226parallel
Strand 3
A
190 194parallel
Strand 4
A
265 268parallel
Strand 5
A
289 292parallel
Strand 6
A
309 310parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il