Analysis of interatomic Contacts of Structural Units in PDB entry:
2GGS


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2GGS entry

There are 2 chains in PDB entry 2GGS (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1VAL 273
B
 MET 1VAL 273
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 2GGS. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
10 21Right-handed alpha
Helix 2
2
A
45 57Right-handed alpha
Helix 3
3
A
69 76Right-handed alpha
Helix 4
4
A
76 85Right-handed alpha
Helix 5
5
A
85 98Right-handed alpha
Helix 6
6
A
109 111Right-handed 310
Helix 7
7
A
128 142Right-handed alpha
Helix 8
8
A
159 170Right-handed alpha
Helix 9
9
A
185 200Right-handed alpha
Helix 10
10
A
214 225Right-handed alpha
Helix 11
11
A
252 259Right-handed alpha
Helix 12
12
A
267 271Right-handed 310
Helix 13
13
B
10 21Right-handed alpha
Helix 14
14
B
45 57Right-handed alpha
Helix 15
15
B
69 76Right-handed alpha
Helix 16
16
B
76 85Right-handed alpha
Helix 17
17
B
85 98Right-handed alpha
Helix 18
18
B
109 111Right-handed 310
Helix 19
19
B
128 142Right-handed alpha
Helix 20
20
B
159 169Right-handed alpha
Helix 21
21
B
186 199Right-handed alpha
Helix 22
22
B
214 226Right-handed alpha
Helix 23
23
B
252 259Right-handed alpha
Helix 24
24
B
267 271Right-handed 310
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There are 7 sheets in PDB entry 2GGS. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
39 40first strand
Strand 2
A
26 30parallel
Strand 3
A
3 6parallel
Strand 4
A
60 63parallel
Strand 5
A
101 107parallel
Strand 6
A
147 151parallel
Strand 7
A
203 206parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
174 177first strand
Strand 2
A
231 234parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
180 181first strand
Strand 2
A
212 213anti-parallel
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There are 6 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
26 29first strand
Strand 2
B
3 6parallel
Strand 3
B
60 63parallel
Strand 4
B
101 107parallel
Strand 5
B
147 151parallel
Strand 6
B
203 206parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
154 155first strand
Strand 2
B
184 185parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
174 177first strand
Strand 2
B
231 234parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
180 181first strand
Strand 2
B
212 213anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il